miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 3691 0.66 0.594699
Target:  5'- -aCCGUCGaGCcgGUGAUGCUCaggUCGauUGCCa -3'
miRNA:   3'- gcGGCAGC-CG--CGCUACGAG---AGC--AUGG- -5'
12957 5' -57.4 NC_003387.1 + 26696 0.67 0.584025
Target:  5'- gCGCCGUCGGCggguuggugGCGAUGaaCcCGacACCg -3'
miRNA:   3'- -GCGGCAGCCG---------CGCUACgaGaGCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 740 0.67 0.584025
Target:  5'- gGCCGUCGGUGCGcgcgacGUGUggcgCGauggGCCu -3'
miRNA:   3'- gCGGCAGCCGCGC------UACGaga-GCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 45079 0.67 0.584025
Target:  5'- gGCCGUCcugGGC-CGGUGUUCggCG-GCCa -3'
miRNA:   3'- gCGGCAG---CCGcGCUACGAGa-GCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 4531 0.67 0.573389
Target:  5'- cCGCCGcCGGUGCGG-GCacCUUGcggGCCu -3'
miRNA:   3'- -GCGGCaGCCGCGCUaCGa-GAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 51229 0.67 0.562799
Target:  5'- gGCCG-CGGCcUGGUGCUCgaCGUcgacGCCc -3'
miRNA:   3'- gCGGCaGCCGcGCUACGAGa-GCA----UGG- -5'
12957 5' -57.4 NC_003387.1 + 51305 0.67 0.562799
Target:  5'- aGCuCGUCGGCgGCGgcGC-CUCGcACa -3'
miRNA:   3'- gCG-GCAGCCG-CGCuaCGaGAGCaUGg -5'
12957 5' -57.4 NC_003387.1 + 23401 0.67 0.552262
Target:  5'- gGCUuUCaGCGCGGccugGCgCUCGUGCCc -3'
miRNA:   3'- gCGGcAGcCGCGCUa---CGaGAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 43700 0.67 0.552262
Target:  5'- uCGCCGaCGGCGCccgccaGGUGCUCgaCGgcgGCa -3'
miRNA:   3'- -GCGGCaGCCGCG------CUACGAGa-GCa--UGg -5'
12957 5' -57.4 NC_003387.1 + 45542 0.67 0.552262
Target:  5'- gGCCGUgCGGCaagGCGAUccgccgccaGCUCgUCGgcacgGCCg -3'
miRNA:   3'- gCGGCA-GCCG---CGCUA---------CGAG-AGCa----UGG- -5'
12957 5' -57.4 NC_003387.1 + 22504 0.67 0.552262
Target:  5'- gGCC-UCGGCgGCGc-GCUCgacgucggCGUACCg -3'
miRNA:   3'- gCGGcAGCCG-CGCuaCGAGa-------GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 20776 0.67 0.552262
Target:  5'- gGCCGgggaugcgacCGGCGCGGaucUGCUCggUGaGCCa -3'
miRNA:   3'- gCGGCa---------GCCGCGCU---ACGAGa-GCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 30247 0.67 0.552262
Target:  5'- gGCCGggucgucggggUCGGCGcCGGggucggGCagccaCUCGUACCg -3'
miRNA:   3'- gCGGC-----------AGCCGC-GCUa-----CGa----GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 28891 0.67 0.541786
Target:  5'- gCGCCGaguccCGGCGCGgcGCcCUcaCGUAUCu -3'
miRNA:   3'- -GCGGCa----GCCGCGCuaCGaGA--GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 16922 0.67 0.541786
Target:  5'- gCGCCGaCGGCGcCGAgGCacagCUCGggGCUg -3'
miRNA:   3'- -GCGGCaGCCGC-GCUaCGa---GAGCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 34217 0.67 0.541786
Target:  5'- uCGCgGUCGGUGCccgGCUCaagCGgcacgACCg -3'
miRNA:   3'- -GCGgCAGCCGCGcuaCGAGa--GCa----UGG- -5'
12957 5' -57.4 NC_003387.1 + 4812 0.67 0.541786
Target:  5'- cCGCCGacCaGCGCG-UGCgcaagCUCGUGCg -3'
miRNA:   3'- -GCGGCa-GcCGCGCuACGa----GAGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 10398 0.68 0.52104
Target:  5'- uGCCGcUCGGUGaucUGCUCgUCGcGCCa -3'
miRNA:   3'- gCGGC-AGCCGCgcuACGAG-AGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 23514 0.68 0.52104
Target:  5'- uGCCGUCGauGCGCaccUGCUugcCUCGgGCCa -3'
miRNA:   3'- gCGGCAGC--CGCGcu-ACGA---GAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 26290 0.68 0.52104
Target:  5'- aCGUCGcaaugcUCGGCGUG--GCUgUCGUGCUg -3'
miRNA:   3'- -GCGGC------AGCCGCGCuaCGAgAGCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.