miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12958 5' -59 NC_003387.1 + 42019 0.66 0.516321
Target:  5'- uGCUCGcccGGCUUGauaccggcggcCACCgCCGAGGCGg -3'
miRNA:   3'- -CGAGUuc-UCGGAC-----------GUGG-GGCUCCGCg -5'
12958 5' -59 NC_003387.1 + 26846 0.66 0.516321
Target:  5'- uGCUCGGcGAGCUguggaUGCACCUcggCGAGucugagcaucGCGCg -3'
miRNA:   3'- -CGAGUU-CUCGG-----ACGUGGG---GCUC----------CGCG- -5'
12958 5' -59 NC_003387.1 + 17716 0.66 0.516321
Target:  5'- aGUUCGAG-GCggUGCGCCCCGgcccggccGGGcCGCc -3'
miRNA:   3'- -CGAGUUCuCGg-ACGUGGGGC--------UCC-GCG- -5'
12958 5' -59 NC_003387.1 + 9131 0.66 0.516321
Target:  5'- uGCUCAAGGGCaCUGacggcaACCaCGucGUGCa -3'
miRNA:   3'- -CGAGUUCUCG-GACg-----UGGgGCucCGCG- -5'
12958 5' -59 NC_003387.1 + 12237 0.66 0.515289
Target:  5'- gGCguggCGAGAGCgUGCACccgauCCCGAauaucccgcgccuGGCGa -3'
miRNA:   3'- -CGa---GUUCUCGgACGUG-----GGGCU-------------CCGCg -5'
12958 5' -59 NC_003387.1 + 25878 0.66 0.495858
Target:  5'- uGC-CGAGcGGCCuggUGCuCCCCGGcguccagggcGGCGCg -3'
miRNA:   3'- -CGaGUUC-UCGG---ACGuGGGGCU----------CCGCG- -5'
12958 5' -59 NC_003387.1 + 9202 0.66 0.495858
Target:  5'- cCUCAcAGA-CCgGCACCCCGc-GCGCu -3'
miRNA:   3'- cGAGU-UCUcGGaCGUGGGGCucCGCG- -5'
12958 5' -59 NC_003387.1 + 52463 0.66 0.495858
Target:  5'- cGCggcgCAgccAGGGCaCUGCACgCUGAgcaugucgggGGCGCg -3'
miRNA:   3'- -CGa---GU---UCUCG-GACGUGgGGCU----------CCGCG- -5'
12958 5' -59 NC_003387.1 + 45445 0.66 0.495858
Target:  5'- aGCUCGccGGGCCUGCGCCgUGgagccagguuAGGaGCg -3'
miRNA:   3'- -CGAGUu-CUCGGACGUGGgGC----------UCCgCG- -5'
12958 5' -59 NC_003387.1 + 16063 0.66 0.495858
Target:  5'- aGgUCGGcGAGCCggugaUGcCACUCgGGGGCGCc -3'
miRNA:   3'- -CgAGUU-CUCGG-----AC-GUGGGgCUCCGCG- -5'
12958 5' -59 NC_003387.1 + 39804 0.66 0.495858
Target:  5'- cGC-CGAcGAGCCaccacuagGCACCCCcacgccgucGAGGcCGCu -3'
miRNA:   3'- -CGaGUU-CUCGGa-------CGUGGGG---------CUCC-GCG- -5'
12958 5' -59 NC_003387.1 + 28455 0.66 0.485765
Target:  5'- -aUCGAcGAGCUggcgGCGgcCCCCGAGGUcaaGCu -3'
miRNA:   3'- cgAGUU-CUCGGa---CGU--GGGGCUCCG---CG- -5'
12958 5' -59 NC_003387.1 + 5797 0.66 0.485765
Target:  5'- --aCAAGccGCCcGCACCaCCGAaGCGCa -3'
miRNA:   3'- cgaGUUCu-CGGaCGUGG-GGCUcCGCG- -5'
12958 5' -59 NC_003387.1 + 23244 0.66 0.485765
Target:  5'- uCUCGcGGGCC-GUGCCCUGcucgcuGGCGCc -3'
miRNA:   3'- cGAGUuCUCGGaCGUGGGGCu-----CCGCG- -5'
12958 5' -59 NC_003387.1 + 2796 0.66 0.475771
Target:  5'- cGUUCGAGGGCaaacccGUuuGCCCCGuuGUGCg -3'
miRNA:   3'- -CGAGUUCUCGga----CG--UGGGGCucCGCG- -5'
12958 5' -59 NC_003387.1 + 7976 0.66 0.475771
Target:  5'- gGCgggCGGGuGCUgcgcuucgGCGCCCCGgccGGGCGa -3'
miRNA:   3'- -CGa--GUUCuCGGa-------CGUGGGGC---UCCGCg -5'
12958 5' -59 NC_003387.1 + 44719 0.66 0.475771
Target:  5'- cGUUCGuuauGCCU-CGCCcggCCGGGGCGCc -3'
miRNA:   3'- -CGAGUucu-CGGAcGUGG---GGCUCCGCG- -5'
12958 5' -59 NC_003387.1 + 5810 0.66 0.46588
Target:  5'- gGCUCAAGcgugcGGCCgUGCacgacgACCUCGGGcuGCGCc -3'
miRNA:   3'- -CGAGUUC-----UCGG-ACG------UGGGGCUC--CGCG- -5'
12958 5' -59 NC_003387.1 + 11311 0.66 0.46588
Target:  5'- aGCUCGAacAGCgacucgugCUGCGCCUCGGucgcccGGCGCu -3'
miRNA:   3'- -CGAGUUc-UCG--------GACGUGGGGCU------CCGCG- -5'
12958 5' -59 NC_003387.1 + 33806 0.66 0.46588
Target:  5'- aGCUgCGuAGGGUCgagcGCGCCgCCGAcGGCGUc -3'
miRNA:   3'- -CGA-GU-UCUCGGa---CGUGG-GGCU-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.