miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 3' -63.1 NC_003387.1 + 33791 0.66 0.315772
Target:  5'- cCGGCUGGUgccgacacccgaugaGGCG-CAG-GGCAUCCCGc -3'
miRNA:   3'- -GUUGGCCG---------------CCGCuGUCgCCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 46879 0.66 0.312831
Target:  5'- -uGCCGGUGGCaccgGACuugaGGcCGCCCCGc -3'
miRNA:   3'- guUGGCCGCCG----CUGucg-CC-GUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 48934 0.66 0.312831
Target:  5'- -uGCCGGCGGguugcUGGCgGGCGGgCugCUCGg -3'
miRNA:   3'- guUGGCCGCC-----GCUG-UCGCC-GugGGGC- -5'
12960 3' -63.1 NC_003387.1 + 22872 0.66 0.312831
Target:  5'- -cGCCGaCGaauCGACAGgGGCGCCUCGu -3'
miRNA:   3'- guUGGCcGCc--GCUGUCgCCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 22478 0.66 0.312831
Target:  5'- aCGACCgcGGCgucguaccgGGCGACggccucGGCGGCGCgCUCGa -3'
miRNA:   3'- -GUUGG--CCG---------CCGCUG------UCGCCGUG-GGGC- -5'
12960 3' -63.1 NC_003387.1 + 25104 0.67 0.308458
Target:  5'- cCAGCCGGuCGGUGucGucgaggcccucguacCAGCGGCACaCCGc -3'
miRNA:   3'- -GUUGGCC-GCCGC--U---------------GUCGCCGUGgGGC- -5'
12960 3' -63.1 NC_003387.1 + 33466 0.67 0.305569
Target:  5'- ----aGGCGGCcgaagucgccgaGGCGGuCGGCGCCCgCGa -3'
miRNA:   3'- guuggCCGCCG------------CUGUC-GCCGUGGG-GC- -5'
12960 3' -63.1 NC_003387.1 + 13647 0.67 0.305569
Target:  5'- -cACCGuCGGCGGCGGCucggucgccgagGGCGCCgUCGa -3'
miRNA:   3'- guUGGCcGCCGCUGUCG------------CCGUGG-GGC- -5'
12960 3' -63.1 NC_003387.1 + 4491 0.67 0.30485
Target:  5'- cCGACCGG-GcGCGACAcgaucguGCGGguCACCUCGg -3'
miRNA:   3'- -GUUGGCCgC-CGCUGU-------CGCC--GUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 18996 0.67 0.304133
Target:  5'- gAGCUGGCGGCGugGGCcucgacgaaccuGUucggauggaucgACCCCGg -3'
miRNA:   3'- gUUGGCCGCCGCugUCGc-----------CG------------UGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 15878 0.67 0.298438
Target:  5'- aCAugUGGCuGCccgaggacgagGACAGCccGCACCCCGa -3'
miRNA:   3'- -GUugGCCGcCG-----------CUGUCGc-CGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 37154 0.67 0.298438
Target:  5'- gCAGCCaGGC-GCGAauCGGCuGCACCuCCGg -3'
miRNA:   3'- -GUUGG-CCGcCGCU--GUCGcCGUGG-GGC- -5'
12960 3' -63.1 NC_003387.1 + 26812 0.67 0.298438
Target:  5'- -cGCUGGUGGUcgGugAGCGcGCcGCCCUGg -3'
miRNA:   3'- guUGGCCGCCG--CugUCGC-CG-UGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 44649 0.67 0.291435
Target:  5'- cCGACCGGCaGCGGguUAGCGcGgGCCgCCa -3'
miRNA:   3'- -GUUGGCCGcCGCU--GUCGC-CgUGG-GGc -5'
12960 3' -63.1 NC_003387.1 + 28451 0.67 0.291435
Target:  5'- -cGCCgaGGCGGCGGCAgaucGCGGCGCagcaCUu -3'
miRNA:   3'- guUGG--CCGCCGCUGU----CGCCGUGg---GGc -5'
12960 3' -63.1 NC_003387.1 + 40143 0.67 0.291435
Target:  5'- aGGCCcaCGGCGACAccGuCGGCGgCCCGa -3'
miRNA:   3'- gUUGGccGCCGCUGU--C-GCCGUgGGGC- -5'
12960 3' -63.1 NC_003387.1 + 42554 0.67 0.284563
Target:  5'- gAGCUGGCGaGCGAgauUGGCGcGCACCUg- -3'
miRNA:   3'- gUUGGCCGC-CGCU---GUCGC-CGUGGGgc -5'
12960 3' -63.1 NC_003387.1 + 25577 0.67 0.284563
Target:  5'- --cCCGGCGGCGccgacccCGGCGGgCacgGCCUCGa -3'
miRNA:   3'- guuGGCCGCCGCu------GUCGCC-G---UGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 10381 0.67 0.284563
Target:  5'- aAGCUGGCccgcaaccucGGCGACGGUucGGCGCUCgGc -3'
miRNA:   3'- gUUGGCCG----------CCGCUGUCG--CCGUGGGgC- -5'
12960 3' -63.1 NC_003387.1 + 29697 0.67 0.284563
Target:  5'- uGGCCgaGGUcgaGGCGcuCGGCGGCGCCCa- -3'
miRNA:   3'- gUUGG--CCG---CCGCu-GUCGCCGUGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.