miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 5' -54.5 NC_003387.1 + 18218 0.67 0.69414
Target:  5'- aUCGCGG---CGCCG-CAGCgGCGGGc -3'
miRNA:   3'- aAGUGCCaaaGUGGCgGUUGgCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 48430 0.67 0.69414
Target:  5'- gUCGCGGUg-CGCUGCuCGcCCGCGGc -3'
miRNA:   3'- aAGUGCCAaaGUGGCG-GUuGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 15251 0.67 0.690847
Target:  5'- -gCACGG--UCGCCGCCGagaagucggucgacGCCG-AGGa -3'
miRNA:   3'- aaGUGCCaaAGUGGCGGU--------------UGGCgUCC- -5'
12960 5' -54.5 NC_003387.1 + 50668 0.67 0.683142
Target:  5'- -aCAUGG---CGCCGCC-ACCGCGGc -3'
miRNA:   3'- aaGUGCCaaaGUGGCGGuUGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 39473 0.67 0.683142
Target:  5'- -gCGCGGUgggaaAUCGCCAugCGCAc- -3'
miRNA:   3'- aaGUGCCAaag--UGGCGGUugGCGUcc -5'
12960 5' -54.5 NC_003387.1 + 13500 0.67 0.683142
Target:  5'- -gCGcCGGUacccgcuccCACUGcCCGACCGCGGGg -3'
miRNA:   3'- aaGU-GCCAaa-------GUGGC-GGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 4013 0.67 0.661006
Target:  5'- -gCACGGUgcUCGacaaCGCCAAgCGCgAGGg -3'
miRNA:   3'- aaGUGCCAa-AGUg---GCGGUUgGCG-UCC- -5'
12960 5' -54.5 NC_003387.1 + 14296 0.67 0.661006
Target:  5'- cUUCuuGGg--CACCagcGCCAGCCGCucGGGg -3'
miRNA:   3'- -AAGugCCaaaGUGG---CGGUUGGCG--UCC- -5'
12960 5' -54.5 NC_003387.1 + 47456 0.67 0.649892
Target:  5'- gUUUACGGcgagucggcuguUgagUUCGCCGUCGGCCaGCGGGu -3'
miRNA:   3'- -AAGUGCC------------A---AAGUGGCGGUUGG-CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 8769 0.67 0.649892
Target:  5'- --uGCGGgccUUCGCCGUgCGGCgGCGGGc -3'
miRNA:   3'- aagUGCCa--AAGUGGCG-GUUGgCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 37604 0.68 0.634306
Target:  5'- aUCAUGGUgcacccgcaccgCACUGCCGagguaaucgccGCCGCAGu -3'
miRNA:   3'- aAGUGCCAaa----------GUGGCGGU-----------UGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 1365 0.68 0.627623
Target:  5'- -cCACGGcaccUCGCCGUCGGCgcucaGCGGGu -3'
miRNA:   3'- aaGUGCCaa--AGUGGCGGUUGg----CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 33375 0.68 0.617603
Target:  5'- aUCGCGGgcggaugggaCGCC-GCCGCAGGc -3'
miRNA:   3'- aAGUGCCaaagug----GCGGuUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 14849 0.68 0.61649
Target:  5'- -aCGCGGUcaaguucaagcaucgUCgaggcgaGCCGCCGGgCGCAGGg -3'
miRNA:   3'- aaGUGCCAa--------------AG-------UGGCGGUUgGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 45598 0.68 0.594275
Target:  5'- cUCGCGuGgcUgAUCGaCCGGCUGCAGGa -3'
miRNA:   3'- aAGUGC-CaaAgUGGC-GGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 6904 0.69 0.56122
Target:  5'- gUCGCGG----GCCaUCAGCCGCGGGa -3'
miRNA:   3'- aAGUGCCaaagUGGcGGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 24766 0.69 0.550307
Target:  5'- cUCGCGGUcgaUCGCCacgaGCCGgaACCGCucGGGg -3'
miRNA:   3'- aAGUGCCAa--AGUGG----CGGU--UGGCG--UCC- -5'
12960 5' -54.5 NC_003387.1 + 52536 0.69 0.528688
Target:  5'- gUCGCGGgccgagUCgagcaccgucuuGCCGUCGGCCaGCAGGc -3'
miRNA:   3'- aAGUGCCaa----AG------------UGGCGGUUGG-CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 6715 0.69 0.528688
Target:  5'- -cCGCGGgcagUUCACCGUCGACuCGCc-- -3'
miRNA:   3'- aaGUGCCa---AAGUGGCGGUUG-GCGucc -5'
12960 5' -54.5 NC_003387.1 + 30917 0.7 0.506334
Target:  5'- -cCACGGcgUCGCuCGCCGagcugccGCCGCGGu -3'
miRNA:   3'- aaGUGCCaaAGUG-GCGGU-------UGGCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.