miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 46503 0.66 0.782253
Target:  5'- --gCGACGAGg-GucCG-GUUGGCCCa -3'
miRNA:   3'- aaaGCUGCUCgaCuuGCaCAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 155 0.66 0.782253
Target:  5'- --cCGcCGAGCUGGGCcUGcUGGCCg -3'
miRNA:   3'- aaaGCuGCUCGACUUGcACaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 19851 0.66 0.782253
Target:  5'- -gUCGuCGAGCUGGcagucgGCGcaGUCGGCg- -3'
miRNA:   3'- aaAGCuGCUCGACU------UGCa-CAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 40097 0.66 0.776204
Target:  5'- cUUCGACGAGUaguUGGggaucauaaugucgaGCGcc-CGGCCCg -3'
miRNA:   3'- aAAGCUGCUCG---ACU---------------UGCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 43723 0.66 0.772141
Target:  5'- -cUCGACggcggcaugcggGAGCccgcGAGCGUGUUGGCg- -3'
miRNA:   3'- aaAGCUG------------CUCGa---CUUGCACAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 32175 0.66 0.772141
Target:  5'- -aUUGACGAGCUGAccgccgagcuGCGcGUCGuCaCCg -3'
miRNA:   3'- aaAGCUGCUCGACU----------UGCaCAGCcG-GG- -5'
12961 3' -54.2 NC_003387.1 + 48215 0.66 0.772141
Target:  5'- --gCGGcCGAGgUGAcccgcacgauCGUGUCGcGCCCg -3'
miRNA:   3'- aaaGCU-GCUCgACUu---------GCACAGC-CGGG- -5'
12961 3' -54.2 NC_003387.1 + 20473 0.66 0.77214
Target:  5'- -cUCGGCGAcgGCcaGGCG-GUCGGCCa -3'
miRNA:   3'- aaAGCUGCU--CGacUUGCaCAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 44613 0.66 0.76188
Target:  5'- --gCGuACGAGCUGGgcucgcccucggGCGgGUUGGCgCCg -3'
miRNA:   3'- aaaGC-UGCUCGACU------------UGCaCAGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 7886 0.66 0.758775
Target:  5'- -aUCGACGAccugGCUGucgucgauccacacGACGUcgGUCaGCCCg -3'
miRNA:   3'- aaAGCUGCU----CGAC--------------UUGCA--CAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 31570 0.66 0.755657
Target:  5'- -cUCGcCGAGCcgcugcuugaccgccUGAACcaUGUCGGCCg -3'
miRNA:   3'- aaAGCuGCUCG---------------ACUUGc-ACAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 20069 0.66 0.751483
Target:  5'- -cUCGGCGuGCgUGAGCGUuauGUCcuugaGGCUCa -3'
miRNA:   3'- aaAGCUGCuCG-ACUUGCA---CAG-----CCGGG- -5'
12961 3' -54.2 NC_003387.1 + 51206 0.66 0.740963
Target:  5'- --cCGAgGuGCUGAGCcugcacGUCGGCCg -3'
miRNA:   3'- aaaGCUgCuCGACUUGca----CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 6317 0.66 0.740963
Target:  5'- -gUCGcCGAGCUGGGCGgccagGcgaUCGGCa- -3'
miRNA:   3'- aaAGCuGCUCGACUUGCa----C---AGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 22991 0.66 0.740963
Target:  5'- -cUCGcccGCGuAGCUGc-CGUcGUCGGCCUg -3'
miRNA:   3'- aaAGC---UGC-UCGACuuGCA-CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 5767 0.66 0.739905
Target:  5'- --nCGACGAGCUGAucgccugGCGUGaccagaacaagCcGCCCg -3'
miRNA:   3'- aaaGCUGCUCGACU-------UGCACa----------GcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 9362 0.66 0.730331
Target:  5'- -gUCGACGAGCcGGugG---CGGCCg -3'
miRNA:   3'- aaAGCUGCUCGaCUugCacaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 29749 0.66 0.730331
Target:  5'- ---gGGCGAGCUGGACGccGaCGGCa- -3'
miRNA:   3'- aaagCUGCUCGACUUGCa-CaGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 835 0.66 0.73033
Target:  5'- -cUCGACGAGCUucuCGgcgaCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGAcuuGCaca-GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 33863 0.66 0.73033
Target:  5'- --gCGACGAGCgccucGGGCGacgacagGUCGauGCCCg -3'
miRNA:   3'- aaaGCUGCUCGa----CUUGCa------CAGC--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.