miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 13573 0.71 0.459618
Target:  5'- -aUCGACGGGCaGGACG--UCGGCUg -3'
miRNA:   3'- aaAGCUGCUCGaCUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 40398 0.71 0.468714
Target:  5'- --gCGGCGAGCUGcACGUgaccuacGUCGGCg- -3'
miRNA:   3'- aaaGCUGCUCGACuUGCA-------CAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 45245 0.71 0.469731
Target:  5'- -gUCGAUGGGCUGGACG---CGGCUg -3'
miRNA:   3'- aaAGCUGCUCGACUUGCacaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 49680 0.71 0.490289
Target:  5'- -gUCGAgcaGuGCUGAGCGUG-CaGCCCg -3'
miRNA:   3'- aaAGCUg--CuCGACUUGCACaGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 27914 0.7 0.543371
Target:  5'- --aCGcCGAGCUGcuGCGccagGUCGGCCg -3'
miRNA:   3'- aaaGCuGCUCGACu-UGCa---CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 23394 0.69 0.554226
Target:  5'- --cCGACGAGCUGAACaUGcccgacaagcgCGGCgCCu -3'
miRNA:   3'- aaaGCUGCUCGACUUGcACa----------GCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 28041 0.69 0.554226
Target:  5'- -cUCGGCGAGCUGA-CGaccaagUGGCUCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCaca---GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 27232 0.69 0.576119
Target:  5'- --cCGGcCGAGCUGAcacgcGCGgucgaggCGGCCCg -3'
miRNA:   3'- aaaGCU-GCUCGACU-----UGCaca----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 43219 0.69 0.586036
Target:  5'- -aUCGGCGAGgUGAcgcaccACGUGuugccguuccuguUCGGCgCCg -3'
miRNA:   3'- aaAGCUGCUCgACU------UGCAC-------------AGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 2046 0.69 0.58714
Target:  5'- -gUCGcCGAGCUGGccGCgGUGgCGGCgCCa -3'
miRNA:   3'- aaAGCuGCUCGACU--UG-CACaGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 20758 0.69 0.58714
Target:  5'- -cUCGAUGcGcCUGcaaGGCGcGUCGGCCCu -3'
miRNA:   3'- aaAGCUGCuC-GAC---UUGCaCAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 27276 0.69 0.58714
Target:  5'- -gUCGcGCGAGgaGAACGccgcacUGgCGGCCCu -3'
miRNA:   3'- aaAGC-UGCUCgaCUUGC------ACaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 8836 0.69 0.58714
Target:  5'- -aUCGACGAGCggcucacCGUGcgcgaUGGCCCa -3'
miRNA:   3'- aaAGCUGCUCGacuu---GCACa----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 44622 0.69 0.5982
Target:  5'- --cCGugGcGC-GAGCGUGU-GGCCCu -3'
miRNA:   3'- aaaGCugCuCGaCUUGCACAgCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 17539 0.68 0.620398
Target:  5'- --cCGACGuGCUGA-----UCGGCCCg -3'
miRNA:   3'- aaaGCUGCuCGACUugcacAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 41884 0.68 0.620398
Target:  5'- -gUCGGCGAGCUGGcgaagcuccaACGUcaUCGcuuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU----------UGCAc-AGC---CGGG- -5'
12961 3' -54.2 NC_003387.1 + 45927 0.68 0.630406
Target:  5'- -gUCGgcACGuGCccGAGCGUGUucgccgaCGGCCCg -3'
miRNA:   3'- aaAGC--UGCuCGa-CUUGCACA-------GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 49509 0.68 0.631518
Target:  5'- -gUCGACGugucgcaauggGGCUGGACGUcgCaGCCCg -3'
miRNA:   3'- aaAGCUGC-----------UCGACUUGCAcaGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 31086 0.68 0.631518
Target:  5'- -gUCGACGAGCUGA-CGc-UCGacgccuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCacAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 6158 0.68 0.642638
Target:  5'- -gUCGGCGuAGCcGAucaGCGUcacgacGUCGGCCUu -3'
miRNA:   3'- aaAGCUGC-UCGaCU---UGCA------CAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.