miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 39270 0.67 0.708777
Target:  5'- -cUCGGCGAGCUGGGCaagcUGcUCGacgacggcaaGCCCc -3'
miRNA:   3'- aaAGCUGCUCGACUUGc---AC-AGC----------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 5308 0.67 0.697879
Target:  5'- -cUgGGCGGG-UGAGCGUGgaCGGCCa -3'
miRNA:   3'- aaAgCUGCUCgACUUGCACa-GCCGGg -5'
12961 3' -54.2 NC_003387.1 + 17140 0.67 0.686916
Target:  5'- -cUCGACcGGCUGucacCGg--CGGCCCg -3'
miRNA:   3'- aaAGCUGcUCGACuu--GCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 49522 0.67 0.686915
Target:  5'- --gCGGCGAGCUu-GCGcugcugGUUGGCCUc -3'
miRNA:   3'- aaaGCUGCUCGAcuUGCa-----CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 35152 0.67 0.686915
Target:  5'- -gUCGACcAGCgGGGCGuUGUC-GCCCu -3'
miRNA:   3'- aaAGCUGcUCGaCUUGC-ACAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 12483 0.67 0.686915
Target:  5'- --aCGACGAGCUGcauGCGggggcugccGUCGuCCCa -3'
miRNA:   3'- aaaGCUGCUCGACu--UGCa--------CAGCcGGG- -5'
12961 3' -54.2 NC_003387.1 + 6376 0.67 0.686915
Target:  5'- -cUCGgccGCGGGCgacgccuuGCGUGggCGGCCCc -3'
miRNA:   3'- aaAGC---UGCUCGacu-----UGCACa-GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 14752 0.67 0.675899
Target:  5'- -gUCGACGAuCUGGuCGuUGUCGuGCUCg -3'
miRNA:   3'- aaAGCUGCUcGACUuGC-ACAGC-CGGG- -5'
12961 3' -54.2 NC_003387.1 + 37112 0.67 0.675899
Target:  5'- -cUCGACGuGCUcGACG--UCGGCCg -3'
miRNA:   3'- aaAGCUGCuCGAcUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 26931 0.68 0.66484
Target:  5'- gUUCGcCGGGCUG-GCcUGUCGGCg- -3'
miRNA:   3'- aAAGCuGCUCGACuUGcACAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 11394 0.68 0.66484
Target:  5'- -aUCGGCGccacGCUGGcCGcGaUCGGCCCc -3'
miRNA:   3'- aaAGCUGCu---CGACUuGCaC-AGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 12992 0.68 0.66484
Target:  5'- --aCGACGAGCUuaaGGCGUcGUCGGgCa -3'
miRNA:   3'- aaaGCUGCUCGAc--UUGCA-CAGCCgGg -5'
12961 3' -54.2 NC_003387.1 + 25826 0.68 0.65375
Target:  5'- -cUCGGCGGcCUGGGCGg--UGGCCUg -3'
miRNA:   3'- aaAGCUGCUcGACUUGCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 32063 0.68 0.653749
Target:  5'- -gUCGACGGuGUcGAACGUGUUcGCCg -3'
miRNA:   3'- aaAGCUGCU-CGaCUUGCACAGcCGGg -5'
12961 3' -54.2 NC_003387.1 + 12975 0.68 0.650418
Target:  5'- -gUCGGCGAGCUGGucgucgauaaucucGCGcugcGUCGucagcaGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU--------------UGCa---CAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 10440 0.68 0.642639
Target:  5'- -gUCGGCGGGCaucGAcagcGCGcUGUCGGUCg -3'
miRNA:   3'- aaAGCUGCUCGa--CU----UGC-ACAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 6158 0.68 0.642638
Target:  5'- -gUCGGCGuAGCcGAucaGCGUcacgacGUCGGCCUu -3'
miRNA:   3'- aaAGCUGC-UCGaCU---UGCA------CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 31086 0.68 0.631518
Target:  5'- -gUCGACGAGCUGA-CGc-UCGacgccuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCacAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 49509 0.68 0.631518
Target:  5'- -gUCGACGugucgcaauggGGCUGGACGUcgCaGCCCg -3'
miRNA:   3'- aaAGCUGC-----------UCGACUUGCAcaGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 45927 0.68 0.630406
Target:  5'- -gUCGgcACGuGCccGAGCGUGUucgccgaCGGCCCg -3'
miRNA:   3'- aaAGC--UGCuCGa-CUUGCACA-------GCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.