miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 155 0.66 0.782253
Target:  5'- --cCGcCGAGCUGGGCcUGcUGGCCg -3'
miRNA:   3'- aaaGCuGCUCGACUUGcACaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 835 0.66 0.73033
Target:  5'- -cUCGACGAGCUucuCGgcgaCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGAcuuGCaca-GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 2046 0.69 0.58714
Target:  5'- -gUCGcCGAGCUGGccGCgGUGgCGGCgCCa -3'
miRNA:   3'- aaAGCuGCUCGACU--UG-CACaGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 2917 0.72 0.41942
Target:  5'- cUUCGACcGGCUGAuCGUGucgcgguUCGGCgCCa -3'
miRNA:   3'- aAAGCUGcUCGACUuGCAC-------AGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 4188 0.76 0.238213
Target:  5'- -cUCGGCGcgguGCUucGGccaccGCGUGUCGGCCCa -3'
miRNA:   3'- aaAGCUGCu---CGA--CU-----UGCACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 5308 0.67 0.697879
Target:  5'- -cUgGGCGGG-UGAGCGUGgaCGGCCa -3'
miRNA:   3'- aaAgCUGCUCgACUUGCACa-GCCGGg -5'
12961 3' -54.2 NC_003387.1 + 5747 0.79 0.146063
Target:  5'- ---gGACGAGCUGAACGccUCGGCCg -3'
miRNA:   3'- aaagCUGCUCGACUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 5767 0.66 0.739905
Target:  5'- --nCGACGAGCUGAucgccugGCGUGaccagaacaagCcGCCCg -3'
miRNA:   3'- aaaGCUGCUCGACU-------UGCACa----------GcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 6158 0.68 0.642638
Target:  5'- -gUCGGCGuAGCcGAucaGCGUcacgacGUCGGCCUu -3'
miRNA:   3'- aaAGCUGC-UCGaCU---UGCA------CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 6317 0.66 0.740963
Target:  5'- -gUCGcCGAGCUGGGCGgccagGcgaUCGGCa- -3'
miRNA:   3'- aaAGCuGCUCGACUUGCa----C---AGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 6376 0.67 0.686915
Target:  5'- -cUCGgccGCGGGCgacgccuuGCGUGggCGGCCCc -3'
miRNA:   3'- aaAGC---UGCUCGacu-----UGCACa-GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 7886 0.66 0.758775
Target:  5'- -aUCGACGAccugGCUGucgucgauccacacGACGUcgGUCaGCCCg -3'
miRNA:   3'- aaAGCUGCU----CGAC--------------UUGCA--CAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 8057 0.74 0.335014
Target:  5'- -cUCGACGAGCUGGcggcccGCGcuaacccgcugccgGUCGGCgCCa -3'
miRNA:   3'- aaAGCUGCUCGACU------UGCa-------------CAGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 8836 0.69 0.58714
Target:  5'- -aUCGACGAGCggcucacCGUGcgcgaUGGCCCa -3'
miRNA:   3'- aaAGCUGCUCGacuu---GCACa----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 9362 0.66 0.730331
Target:  5'- -gUCGACGAGCcGGugG---CGGCCg -3'
miRNA:   3'- aaAGCUGCUCGaCUugCacaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 10030 0.73 0.362877
Target:  5'- --aCGACGAGCcGAagcgcgccgagggcGCgGUGUCGGCCg -3'
miRNA:   3'- aaaGCUGCUCGaCU--------------UG-CACAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 10440 0.68 0.642639
Target:  5'- -gUCGGCGGGCaucGAcagcGCGcUGUCGGUCg -3'
miRNA:   3'- aaAGCUGCUCGa--CU----UGC-ACAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 11394 0.68 0.66484
Target:  5'- -aUCGGCGccacGCUGGcCGcGaUCGGCCCc -3'
miRNA:   3'- aaAGCUGCu---CGACUuGCaC-AGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 12483 0.67 0.686915
Target:  5'- --aCGACGAGCUGcauGCGggggcugccGUCGuCCCa -3'
miRNA:   3'- aaaGCUGCUCGACu--UGCa--------CAGCcGGG- -5'
12961 3' -54.2 NC_003387.1 + 12975 0.68 0.650418
Target:  5'- -gUCGGCGAGCUGGucgucgauaaucucGCGcugcGUCGucagcaGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU--------------UGCa---CAGC------CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.