miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 27447 0.72 0.420375
Target:  5'- -aUCGACGGGUcGAGCGcacgcgcgacGUCGGCCg -3'
miRNA:   3'- aaAGCUGCUCGaCUUGCa---------CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 27914 0.7 0.543371
Target:  5'- --aCGcCGAGCUGcuGCGccagGUCGGCCg -3'
miRNA:   3'- aaaGCuGCUCGACu-UGCa---CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 28041 0.69 0.554226
Target:  5'- -cUCGGCGAGCUGA-CGaccaagUGGCUCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCaca---GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 28455 0.81 0.119954
Target:  5'- -aUCGACGAGCUG-GCGg--CGGCCCc -3'
miRNA:   3'- aaAGCUGCUCGACuUGCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 29749 0.66 0.730331
Target:  5'- ---gGGCGAGCUGGACGccGaCGGCa- -3'
miRNA:   3'- aaagCUGCUCGACUUGCa-CaGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 31086 0.68 0.631518
Target:  5'- -gUCGACGAGCUGA-CGc-UCGacgccuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCacAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 31570 0.66 0.755657
Target:  5'- -cUCGcCGAGCcgcugcuugaccgccUGAACcaUGUCGGCCg -3'
miRNA:   3'- aaAGCuGCUCG---------------ACUUGc-ACAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 32063 0.68 0.653749
Target:  5'- -gUCGACGGuGUcGAACGUGUUcGCCg -3'
miRNA:   3'- aaAGCUGCU-CGaCUUGCACAGcCGGg -5'
12961 3' -54.2 NC_003387.1 + 32175 0.66 0.772141
Target:  5'- -aUUGACGAGCUGAccgccgagcuGCGcGUCGuCaCCg -3'
miRNA:   3'- aaAGCUGCUCGACU----------UGCaCAGCcG-GG- -5'
12961 3' -54.2 NC_003387.1 + 33863 0.66 0.73033
Target:  5'- --gCGACGAGCgccucGGGCGacgacagGUCGauGCCCg -3'
miRNA:   3'- aaaGCUGCUCGa----CUUGCa------CAGC--CGGG- -5'
12961 3' -54.2 NC_003387.1 + 34147 0.72 0.401527
Target:  5'- -cUCGACGAGCaccaGGGCGUcgcccUCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGa---CUUGCAc----AGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 35152 0.67 0.686915
Target:  5'- -gUCGACcAGCgGGGCGuUGUC-GCCCu -3'
miRNA:   3'- aaAGCUGcUCGaCUUGC-ACAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 37112 0.67 0.675899
Target:  5'- -cUCGACGuGCUcGACG--UCGGCCg -3'
miRNA:   3'- aaAGCUGCuCGAcUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 37245 1.11 0.000953
Target:  5'- aUUUCGACGAGCUGAACGUGUCGGCCCg -3'
miRNA:   3'- -AAAGCUGCUCGACUUGCACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 39270 0.67 0.708777
Target:  5'- -cUCGGCGAGCUGGGCaagcUGcUCGacgacggcaaGCCCc -3'
miRNA:   3'- aaAGCUGCUCGACUUGc---AC-AGC----------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 40097 0.66 0.776204
Target:  5'- cUUCGACGAGUaguUGGggaucauaaugucgaGCGcc-CGGCCCg -3'
miRNA:   3'- aAAGCUGCUCG---ACU---------------UGCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 40398 0.71 0.468714
Target:  5'- --gCGGCGAGCUGcACGUgaccuacGUCGGCg- -3'
miRNA:   3'- aaaGCUGCUCGACuUGCA-------CAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 41826 0.86 0.053332
Target:  5'- -aUCGACGAGCUGAGCauccugGUCGGCCa -3'
miRNA:   3'- aaAGCUGCUCGACUUGca----CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 41884 0.68 0.620398
Target:  5'- -gUCGGCGAGCUGGcgaagcuccaACGUcaUCGcuuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU----------UGCAc-AGC---CGGG- -5'
12961 3' -54.2 NC_003387.1 + 43219 0.69 0.586036
Target:  5'- -aUCGGCGAGgUGAcgcaccACGUGuugccguuccuguUCGGCgCCg -3'
miRNA:   3'- aaAGCUGCUCgACU------UGCAC-------------AGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.