miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 43723 0.66 0.772141
Target:  5'- -cUCGACggcggcaugcggGAGCccgcGAGCGUGUUGGCg- -3'
miRNA:   3'- aaAGCUG------------CUCGa---CUUGCACAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 43919 0.75 0.271297
Target:  5'- gUUCGggcGCGAGCUGAGCGggaaucagGUC-GCCCg -3'
miRNA:   3'- aAAGC---UGCUCGACUUGCa-------CAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 44613 0.66 0.76188
Target:  5'- --gCGuACGAGCUGGgcucgcccucggGCGgGUUGGCgCCg -3'
miRNA:   3'- aaaGC-UGCUCGACU------------UGCaCAGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 44622 0.69 0.5982
Target:  5'- --cCGugGcGC-GAGCGUGU-GGCCCu -3'
miRNA:   3'- aaaGCugCuCGaCUUGCACAgCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 45245 0.71 0.469731
Target:  5'- -gUCGAUGGGCUGGACG---CGGCUg -3'
miRNA:   3'- aaAGCUGCUCGACUUGCacaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 45927 0.68 0.630406
Target:  5'- -gUCGgcACGuGCccGAGCGUGUucgccgaCGGCCCg -3'
miRNA:   3'- aaAGC--UGCuCGa-CUUGCACA-------GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 46503 0.66 0.782253
Target:  5'- --gCGACGAGg-GucCG-GUUGGCCCa -3'
miRNA:   3'- aaaGCUGCUCgaCuuGCaCAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 46780 0.82 0.104036
Target:  5'- gUUCGGCGAGCUGAucgagaAgGUGUucgaCGGCCCg -3'
miRNA:   3'- aAAGCUGCUCGACU------UgCACA----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 48156 0.74 0.307976
Target:  5'- -cUCGGCGAGC--AGCuUGUCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGacUUGcACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 48215 0.66 0.772141
Target:  5'- --gCGGcCGAGgUGAcccgcacgauCGUGUCGcGCCCg -3'
miRNA:   3'- aaaGCU-GCUCgACUu---------GCACAGC-CGGG- -5'
12961 3' -54.2 NC_003387.1 + 48259 0.76 0.244549
Target:  5'- --gCGGCGGGCUcGGCG-GUCGGCUCg -3'
miRNA:   3'- aaaGCUGCUCGAcUUGCaCAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 49509 0.68 0.631518
Target:  5'- -gUCGACGugucgcaauggGGCUGGACGUcgCaGCCCg -3'
miRNA:   3'- aaAGCUGC-----------UCGACUUGCAcaGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 49522 0.67 0.686915
Target:  5'- --gCGGCGAGCUu-GCGcugcugGUUGGCCUc -3'
miRNA:   3'- aaaGCUGCUCGAcuUGCa-----CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 49680 0.71 0.490289
Target:  5'- -gUCGAgcaGuGCUGAGCGUG-CaGCCCg -3'
miRNA:   3'- aaAGCUg--CuCGACUUGCACaGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 50837 0.71 0.438766
Target:  5'- aUUCagcGCGGGCUGAucgccaugcgucaACGUGUCGGCg- -3'
miRNA:   3'- aAAGc--UGCUCGACU-------------UGCACAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 51206 0.66 0.740963
Target:  5'- --cCGAgGuGCUGAGCcugcacGUCGGCCg -3'
miRNA:   3'- aaaGCUgCuCGACUUGca----CAGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.