miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 23910 0.77 0.214234
Target:  5'- --cCGAgGGGCUGAACGUcGUCGagcuGCCCg -3'
miRNA:   3'- aaaGCUgCUCGACUUGCA-CAGC----CGGG- -5'
12961 3' -54.2 NC_003387.1 + 23394 0.69 0.554226
Target:  5'- --cCGACGAGCUGAACaUGcccgacaagcgCGGCgCCu -3'
miRNA:   3'- aaaGCUGCUCGACUUGcACa----------GCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 22991 0.66 0.740963
Target:  5'- -cUCGcccGCGuAGCUGc-CGUcGUCGGCCUg -3'
miRNA:   3'- aaAGC---UGC-UCGACuuGCA-CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 20758 0.69 0.58714
Target:  5'- -cUCGAUGcGcCUGcaaGGCGcGUCGGCCCu -3'
miRNA:   3'- aaAGCUGCuC-GAC---UUGCaCAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 20473 0.66 0.77214
Target:  5'- -cUCGGCGAcgGCcaGGCG-GUCGGCCa -3'
miRNA:   3'- aaAGCUGCU--CGacUUGCaCAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 20069 0.66 0.751483
Target:  5'- -cUCGGCGuGCgUGAGCGUuauGUCcuugaGGCUCa -3'
miRNA:   3'- aaAGCUGCuCG-ACUUGCA---CAG-----CCGGG- -5'
12961 3' -54.2 NC_003387.1 + 19851 0.66 0.782253
Target:  5'- -gUCGuCGAGCUGGcagucgGCGcaGUCGGCg- -3'
miRNA:   3'- aaAGCuGCUCGACU------UGCa-CAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 18990 0.78 0.192357
Target:  5'- -aUCGACGAGCUGGcgGCGUG--GGCCUc -3'
miRNA:   3'- aaAGCUGCUCGACU--UGCACagCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 18385 0.73 0.348325
Target:  5'- -gUCGACGucgaucGGCUGcGACGgGUCGGCCg -3'
miRNA:   3'- aaAGCUGC------UCGAC-UUGCaCAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 17624 0.72 0.392307
Target:  5'- -cUCGACGAGCcgGAauGCGUGcCaGGCCa -3'
miRNA:   3'- aaAGCUGCUCGa-CU--UGCACaG-CCGGg -5'
12961 3' -54.2 NC_003387.1 + 17539 0.68 0.620398
Target:  5'- --cCGACGuGCUGA-----UCGGCCCg -3'
miRNA:   3'- aaaGCUGCuCGACUugcacAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 17140 0.67 0.686916
Target:  5'- -cUCGACcGGCUGucacCGg--CGGCCCg -3'
miRNA:   3'- aaAGCUGcUCGACuu--GCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 14752 0.67 0.675899
Target:  5'- -gUCGACGAuCUGGuCGuUGUCGuGCUCg -3'
miRNA:   3'- aaAGCUGCUcGACUuGC-ACAGC-CGGG- -5'
12961 3' -54.2 NC_003387.1 + 14573 0.79 0.160535
Target:  5'- -cUCGACGAGCcgggGAAcuugaggucgauaacCGUGUCGGUCCa -3'
miRNA:   3'- aaAGCUGCUCGa---CUU---------------GCACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 13573 0.71 0.459618
Target:  5'- -aUCGACGGGCaGGACG--UCGGCUg -3'
miRNA:   3'- aaAGCUGCUCGaCUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 12992 0.68 0.66484
Target:  5'- --aCGACGAGCUuaaGGCGUcGUCGGgCa -3'
miRNA:   3'- aaaGCUGCUCGAc--UUGCA-CAGCCgGg -5'
12961 3' -54.2 NC_003387.1 + 12975 0.68 0.650418
Target:  5'- -gUCGGCGAGCUGGucgucgauaaucucGCGcugcGUCGucagcaGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU--------------UGCa---CAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 12483 0.67 0.686915
Target:  5'- --aCGACGAGCUGcauGCGggggcugccGUCGuCCCa -3'
miRNA:   3'- aaaGCUGCUCGACu--UGCa--------CAGCcGGG- -5'
12961 3' -54.2 NC_003387.1 + 11394 0.68 0.66484
Target:  5'- -aUCGGCGccacGCUGGcCGcGaUCGGCCCc -3'
miRNA:   3'- aaAGCUGCu---CGACUuGCaC-AGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 10440 0.68 0.642639
Target:  5'- -gUCGGCGGGCaucGAcagcGCGcUGUCGGUCg -3'
miRNA:   3'- aaAGCUGCUCGa--CU----UGC-ACAGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.