Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 27276 | 0.69 | 0.58714 |
Target: 5'- -gUCGcGCGAGgaGAACGccgcacUGgCGGCCCu -3' miRNA: 3'- aaAGC-UGCUCgaCUUGC------ACaGCCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 20758 | 0.69 | 0.58714 |
Target: 5'- -cUCGAUGcGcCUGcaaGGCGcGUCGGCCCu -3' miRNA: 3'- aaAGCUGCuC-GAC---UUGCaCAGCCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 23394 | 0.69 | 0.554226 |
Target: 5'- --cCGACGAGCUGAACaUGcccgacaagcgCGGCgCCu -3' miRNA: 3'- aaaGCUGCUCGACUUGcACa----------GCCG-GG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 45245 | 0.71 | 0.469731 |
Target: 5'- -gUCGAUGGGCUGGACG---CGGCUg -3' miRNA: 3'- aaAGCUGCUCGACUUGCacaGCCGGg -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 5308 | 0.67 | 0.697879 |
Target: 5'- -cUgGGCGGG-UGAGCGUGgaCGGCCa -3' miRNA: 3'- aaAgCUGCUCgACUUGCACa-GCCGGg -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 10440 | 0.68 | 0.642639 |
Target: 5'- -gUCGGCGGGCaucGAcagcGCGcUGUCGGUCg -3' miRNA: 3'- aaAGCUGCUCGa--CU----UGC-ACAGCCGGg -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 43219 | 0.69 | 0.586036 |
Target: 5'- -aUCGGCGAGgUGAcgcaccACGUGuugccguuccuguUCGGCgCCg -3' miRNA: 3'- aaAGCUGCUCgACU------UGCAC-------------AGCCG-GG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 40398 | 0.71 | 0.468714 |
Target: 5'- --gCGGCGAGCUGcACGUgaccuacGUCGGCg- -3' miRNA: 3'- aaaGCUGCUCGACuUGCA-------CAGCCGgg -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 49509 | 0.68 | 0.631518 |
Target: 5'- -gUCGACGugucgcaauggGGCUGGACGUcgCaGCCCg -3' miRNA: 3'- aaAGCUGC-----------UCGACUUGCAcaGcCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 13573 | 0.71 | 0.459618 |
Target: 5'- -aUCGACGGGCaGGACG--UCGGCUg -3' miRNA: 3'- aaAGCUGCUCGaCUUGCacAGCCGGg -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 2046 | 0.69 | 0.58714 |
Target: 5'- -gUCGcCGAGCUGGccGCgGUGgCGGCgCCa -3' miRNA: 3'- aaAGCuGCUCGACU--UG-CACaGCCG-GG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 44622 | 0.69 | 0.5982 |
Target: 5'- --cCGugGcGC-GAGCGUGU-GGCCCu -3' miRNA: 3'- aaaGCugCuCGaCUUGCACAgCCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 27232 | 0.69 | 0.576119 |
Target: 5'- --cCGGcCGAGCUGAcacgcGCGgucgaggCGGCCCg -3' miRNA: 3'- aaaGCU-GCUCGACU-----UGCaca----GCCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 28041 | 0.69 | 0.554226 |
Target: 5'- -cUCGGCGAGCUGA-CGaccaagUGGCUCg -3' miRNA: 3'- aaAGCUGCUCGACUuGCaca---GCCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 27914 | 0.7 | 0.543371 |
Target: 5'- --aCGcCGAGCUGcuGCGccagGUCGGCCg -3' miRNA: 3'- aaaGCuGCUCGACu-UGCa---CAGCCGGg -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 49680 | 0.71 | 0.490289 |
Target: 5'- -gUCGAgcaGuGCUGAGCGUG-CaGCCCg -3' miRNA: 3'- aaAGCUg--CuCGACUUGCACaGcCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 5767 | 0.66 | 0.739905 |
Target: 5'- --nCGACGAGCUGAucgccugGCGUGaccagaacaagCcGCCCg -3' miRNA: 3'- aaaGCUGCUCGACU-------UGCACa----------GcCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 39270 | 0.67 | 0.708777 |
Target: 5'- -cUCGGCGAGCUGGGCaagcUGcUCGacgacggcaaGCCCc -3' miRNA: 3'- aaAGCUGCUCGACUUGc---AC-AGC----------CGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 11394 | 0.68 | 0.66484 |
Target: 5'- -aUCGGCGccacGCUGGcCGcGaUCGGCCCc -3' miRNA: 3'- aaAGCUGCu---CGACUuGCaC-AGCCGGG- -5' |
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12961 | 3' | -54.2 | NC_003387.1 | + | 25826 | 0.68 | 0.65375 |
Target: 5'- -cUCGGCGGcCUGGGCGg--UGGCCUg -3' miRNA: 3'- aaAGCUGCUcGACUUGCacaGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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