miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 32063 0.68 0.653749
Target:  5'- -gUCGACGGuGUcGAACGUGUUcGCCg -3'
miRNA:   3'- aaAGCUGCU-CGaCUUGCACAGcCGGg -5'
12961 3' -54.2 NC_003387.1 + 14573 0.79 0.160535
Target:  5'- -cUCGACGAGCcgggGAAcuugaggucgauaacCGUGUCGGUCCa -3'
miRNA:   3'- aaAGCUGCUCGa---CUU---------------GCACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 48259 0.76 0.244549
Target:  5'- --gCGGCGGGCUcGGCG-GUCGGCUCg -3'
miRNA:   3'- aaaGCUGCUCGAcUUGCaCAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 48156 0.74 0.307976
Target:  5'- -cUCGGCGAGC--AGCuUGUCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGacUUGcACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 4188 0.76 0.238213
Target:  5'- -cUCGGCGcgguGCUucGGccaccGCGUGUCGGCCCa -3'
miRNA:   3'- aaAGCUGCu---CGA--CU-----UGCACAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 18385 0.73 0.348325
Target:  5'- -gUCGACGucgaucGGCUGcGACGgGUCGGCCg -3'
miRNA:   3'- aaAGCUGC------UCGAC-UUGCaCAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 17624 0.72 0.392307
Target:  5'- -cUCGACGAGCcgGAauGCGUGcCaGGCCa -3'
miRNA:   3'- aaAGCUGCUCGa-CU--UGCACaG-CCGGg -5'
12961 3' -54.2 NC_003387.1 + 34147 0.72 0.401527
Target:  5'- -cUCGACGAGCaccaGGGCGUcgcccUCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGa---CUUGCAc----AGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 27447 0.72 0.420375
Target:  5'- -aUCGACGGGUcGAGCGcacgcgcgacGUCGGCCg -3'
miRNA:   3'- aaAGCUGCUCGaCUUGCa---------CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 50837 0.71 0.438766
Target:  5'- aUUCagcGCGGGCUGAucgccaugcgucaACGUGUCGGCg- -3'
miRNA:   3'- aAAGc--UGCUCGACU-------------UGCACAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 8836 0.69 0.58714
Target:  5'- -aUCGACGAGCggcucacCGUGcgcgaUGGCCCa -3'
miRNA:   3'- aaAGCUGCUCGacuu---GCACa----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 41884 0.68 0.620398
Target:  5'- -gUCGGCGAGCUGGcgaagcuccaACGUcaUCGcuuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU----------UGCAc-AGC---CGGG- -5'
12961 3' -54.2 NC_003387.1 + 31086 0.68 0.631518
Target:  5'- -gUCGACGAGCUGA-CGc-UCGacgccuGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCacAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 6158 0.68 0.642638
Target:  5'- -gUCGGCGuAGCcGAucaGCGUcacgacGUCGGCCUu -3'
miRNA:   3'- aaAGCUGC-UCGaCU---UGCA------CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 12975 0.68 0.650418
Target:  5'- -gUCGGCGAGCUGGucgucgauaaucucGCGcugcGUCGucagcaGCCCg -3'
miRNA:   3'- aaAGCUGCUCGACU--------------UGCa---CAGC------CGGG- -5'
12961 3' -54.2 NC_003387.1 + 46503 0.66 0.782253
Target:  5'- --gCGACGAGg-GucCG-GUUGGCCCa -3'
miRNA:   3'- aaaGCUGCUCgaCuuGCaCAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.