miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 20473 0.66 0.77214
Target:  5'- -cUCGGCGAcgGCcaGGCG-GUCGGCCa -3'
miRNA:   3'- aaAGCUGCU--CGacUUGCaCAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 44613 0.66 0.76188
Target:  5'- --gCGuACGAGCUGGgcucgcccucggGCGgGUUGGCgCCg -3'
miRNA:   3'- aaaGC-UGCUCGACU------------UGCaCAGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 7886 0.66 0.758775
Target:  5'- -aUCGACGAccugGCUGucgucgauccacacGACGUcgGUCaGCCCg -3'
miRNA:   3'- aaAGCUGCU----CGAC--------------UUGCA--CAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 31570 0.66 0.755657
Target:  5'- -cUCGcCGAGCcgcugcuugaccgccUGAACcaUGUCGGCCg -3'
miRNA:   3'- aaAGCuGCUCG---------------ACUUGc-ACAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 20069 0.66 0.751483
Target:  5'- -cUCGGCGuGCgUGAGCGUuauGUCcuugaGGCUCa -3'
miRNA:   3'- aaAGCUGCuCG-ACUUGCA---CAG-----CCGGG- -5'
12961 3' -54.2 NC_003387.1 + 6376 0.67 0.686915
Target:  5'- -cUCGgccGCGGGCgacgccuuGCGUGggCGGCCCc -3'
miRNA:   3'- aaAGC---UGCUCGacu-----UGCACa-GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 12483 0.67 0.686915
Target:  5'- --aCGACGAGCUGcauGCGggggcugccGUCGuCCCa -3'
miRNA:   3'- aaaGCUGCUCGACu--UGCa--------CAGCcGGG- -5'
12961 3' -54.2 NC_003387.1 + 35152 0.67 0.686915
Target:  5'- -gUCGACcAGCgGGGCGuUGUC-GCCCu -3'
miRNA:   3'- aaAGCUGcUCGaCUUGC-ACAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 33863 0.66 0.73033
Target:  5'- --gCGACGAGCgccucGGGCGacgacagGUCGauGCCCg -3'
miRNA:   3'- aaaGCUGCUCGa----CUUGCa------CAGC--CGGG- -5'
12961 3' -54.2 NC_003387.1 + 835 0.66 0.73033
Target:  5'- -cUCGACGAGCUucuCGgcgaCGGCCUu -3'
miRNA:   3'- aaAGCUGCUCGAcuuGCaca-GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 22991 0.66 0.740963
Target:  5'- -cUCGcccGCGuAGCUGc-CGUcGUCGGCCUg -3'
miRNA:   3'- aaAGC---UGC-UCGACuuGCA-CAGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 8057 0.74 0.335014
Target:  5'- -cUCGACGAGCUGGcggcccGCGcuaacccgcugccgGUCGGCgCCa -3'
miRNA:   3'- aaAGCUGCUCGACU------UGCa-------------CAGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 43919 0.75 0.271297
Target:  5'- gUUCGggcGCGAGCUGAGCGggaaucagGUC-GCCCg -3'
miRNA:   3'- aAAGC---UGCUCGACUUGCa-------CAGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 23910 0.77 0.214234
Target:  5'- --cCGAgGGGCUGAACGUcGUCGagcuGCCCg -3'
miRNA:   3'- aaaGCUgCUCGACUUGCA-CAGC----CGGG- -5'
12961 3' -54.2 NC_003387.1 + 18990 0.78 0.192357
Target:  5'- -aUCGACGAGCUGGcgGCGUG--GGCCUc -3'
miRNA:   3'- aaAGCUGCUCGACU--UGCACagCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 5747 0.79 0.146063
Target:  5'- ---gGACGAGCUGAACGccUCGGCCg -3'
miRNA:   3'- aaagCUGCUCGACUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 28455 0.81 0.119954
Target:  5'- -aUCGACGAGCUG-GCGg--CGGCCCc -3'
miRNA:   3'- aaAGCUGCUCGACuUGCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 46780 0.82 0.104036
Target:  5'- gUUCGGCGAGCUGAucgagaAgGUGUucgaCGGCCCg -3'
miRNA:   3'- aAAGCUGCUCGACU------UgCACA----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 41826 0.86 0.053332
Target:  5'- -aUCGACGAGCUGAGCauccugGUCGGCCa -3'
miRNA:   3'- aaAGCUGCUCGACUUGca----CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 155 0.66 0.782253
Target:  5'- --cCGcCGAGCUGGGCcUGcUGGCCg -3'
miRNA:   3'- aaaGCuGCUCGACUUGcACaGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.