Results 41 - 60 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 45927 | 0.68 | 0.630406 |
Target: 5'- -gUCGgcACGuGCccGAGCGUGUucgccgaCGGCCCg -3' miRNA: 3'- aaAGC--UGCuCGa-CUUGCACA-------GCCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 49509 | 0.68 | 0.631518 |
Target: 5'- -gUCGACGugucgcaauggGGCUGGACGUcgCaGCCCg -3' miRNA: 3'- aaAGCUGC-----------UCGACUUGCAcaGcCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 10440 | 0.68 | 0.642639 |
Target: 5'- -gUCGGCGGGCaucGAcagcGCGcUGUCGGUCg -3' miRNA: 3'- aaAGCUGCUCGa--CU----UGC-ACAGCCGGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 25826 | 0.68 | 0.65375 |
Target: 5'- -cUCGGCGGcCUGGGCGg--UGGCCUg -3' miRNA: 3'- aaAGCUGCUcGACUUGCacaGCCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 12992 | 0.68 | 0.66484 |
Target: 5'- --aCGACGAGCUuaaGGCGUcGUCGGgCa -3' miRNA: 3'- aaaGCUGCUCGAc--UUGCA-CAGCCgGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 27914 | 0.7 | 0.543371 |
Target: 5'- --aCGcCGAGCUGcuGCGccagGUCGGCCg -3' miRNA: 3'- aaaGCuGCUCGACu-UGCa---CAGCCGGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 49680 | 0.71 | 0.490289 |
Target: 5'- -gUCGAgcaGuGCUGAGCGUG-CaGCCCg -3' miRNA: 3'- aaAGCUg--CuCGACUUGCACaGcCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 41826 | 0.86 | 0.053332 |
Target: 5'- -aUCGACGAGCUGAGCauccugGUCGGCCa -3' miRNA: 3'- aaAGCUGCUCGACUUGca----CAGCCGGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 46780 | 0.82 | 0.104036 |
Target: 5'- gUUCGGCGAGCUGAucgagaAgGUGUucgaCGGCCCg -3' miRNA: 3'- aAAGCUGCUCGACU------UgCACA----GCCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 28455 | 0.81 | 0.119954 |
Target: 5'- -aUCGACGAGCUG-GCGg--CGGCCCc -3' miRNA: 3'- aaAGCUGCUCGACuUGCacaGCCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 5747 | 0.79 | 0.146063 |
Target: 5'- ---gGACGAGCUGAACGccUCGGCCg -3' miRNA: 3'- aaagCUGCUCGACUUGCacAGCCGGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 18990 | 0.78 | 0.192357 |
Target: 5'- -aUCGACGAGCUGGcgGCGUG--GGCCUc -3' miRNA: 3'- aaAGCUGCUCGACU--UGCACagCCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 23910 | 0.77 | 0.214234 |
Target: 5'- --cCGAgGGGCUGAACGUcGUCGagcuGCCCg -3' miRNA: 3'- aaaGCUgCUCGACUUGCA-CAGC----CGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 43919 | 0.75 | 0.271297 |
Target: 5'- gUUCGggcGCGAGCUGAGCGggaaucagGUC-GCCCg -3' miRNA: 3'- aAAGC---UGCUCGACUUGCa-------CAGcCGGG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 8057 | 0.74 | 0.335014 |
Target: 5'- -cUCGACGAGCUGGcggcccGCGcuaacccgcugccgGUCGGCgCCa -3' miRNA: 3'- aaAGCUGCUCGACU------UGCa-------------CAGCCG-GG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 10030 | 0.73 | 0.362877 |
Target: 5'- --aCGACGAGCcGAagcgcgccgagggcGCgGUGUCGGCCg -3' miRNA: 3'- aaaGCUGCUCGaCU--------------UG-CACAGCCGGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 2917 | 0.72 | 0.41942 |
Target: 5'- cUUCGACcGGCUGAuCGUGucgcgguUCGGCgCCa -3' miRNA: 3'- aAAGCUGcUCGACUuGCAC-------AGCCG-GG- -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 13573 | 0.71 | 0.459618 |
Target: 5'- -aUCGACGGGCaGGACG--UCGGCUg -3' miRNA: 3'- aaAGCUGCUCGaCUUGCacAGCCGGg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 40398 | 0.71 | 0.468714 |
Target: 5'- --gCGGCGAGCUGcACGUgaccuacGUCGGCg- -3' miRNA: 3'- aaaGCUGCUCGACuUGCA-------CAGCCGgg -5' |
|||||||
12961 | 3' | -54.2 | NC_003387.1 | + | 45245 | 0.71 | 0.469731 |
Target: 5'- -gUCGAUGGGCUGGACG---CGGCUg -3' miRNA: 3'- aaAGCUGCUCGACUUGCacaGCCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home