miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 3' -54.2 NC_003387.1 + 5747 0.79 0.146063
Target:  5'- ---gGACGAGCUGAACGccUCGGCCg -3'
miRNA:   3'- aaagCUGCUCGACUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 28455 0.81 0.119954
Target:  5'- -aUCGACGAGCUG-GCGg--CGGCCCc -3'
miRNA:   3'- aaAGCUGCUCGACuUGCacaGCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 46780 0.82 0.104036
Target:  5'- gUUCGGCGAGCUGAucgagaAgGUGUucgaCGGCCCg -3'
miRNA:   3'- aAAGCUGCUCGACU------UgCACA----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 41826 0.86 0.053332
Target:  5'- -aUCGACGAGCUGAGCauccugGUCGGCCa -3'
miRNA:   3'- aaAGCUGCUCGACUUGca----CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 2917 0.72 0.41942
Target:  5'- cUUCGACcGGCUGAuCGUGucgcgguUCGGCgCCa -3'
miRNA:   3'- aAAGCUGcUCGACUuGCAC-------AGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 13573 0.71 0.459618
Target:  5'- -aUCGACGGGCaGGACG--UCGGCUg -3'
miRNA:   3'- aaAGCUGCUCGaCUUGCacAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 2046 0.69 0.58714
Target:  5'- -gUCGcCGAGCUGGccGCgGUGgCGGCgCCa -3'
miRNA:   3'- aaAGCuGCUCGACU--UG-CACaGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 43219 0.69 0.586036
Target:  5'- -aUCGGCGAGgUGAcgcaccACGUGuugccguuccuguUCGGCgCCg -3'
miRNA:   3'- aaAGCUGCUCgACU------UGCAC-------------AGCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 27232 0.69 0.576119
Target:  5'- --cCGGcCGAGCUGAcacgcGCGgucgaggCGGCCCg -3'
miRNA:   3'- aaaGCU-GCUCGACU-----UGCaca----GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 28041 0.69 0.554226
Target:  5'- -cUCGGCGAGCUGA-CGaccaagUGGCUCg -3'
miRNA:   3'- aaAGCUGCUCGACUuGCaca---GCCGGG- -5'
12961 3' -54.2 NC_003387.1 + 23394 0.69 0.554226
Target:  5'- --cCGACGAGCUGAACaUGcccgacaagcgCGGCgCCu -3'
miRNA:   3'- aaaGCUGCUCGACUUGcACa----------GCCG-GG- -5'
12961 3' -54.2 NC_003387.1 + 27914 0.7 0.543371
Target:  5'- --aCGcCGAGCUGcuGCGccagGUCGGCCg -3'
miRNA:   3'- aaaGCuGCUCGACu-UGCa---CAGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 49680 0.71 0.490289
Target:  5'- -gUCGAgcaGuGCUGAGCGUG-CaGCCCg -3'
miRNA:   3'- aaAGCUg--CuCGACUUGCACaGcCGGG- -5'
12961 3' -54.2 NC_003387.1 + 45245 0.71 0.469731
Target:  5'- -gUCGAUGGGCUGGACG---CGGCUg -3'
miRNA:   3'- aaAGCUGCUCGACUUGCacaGCCGGg -5'
12961 3' -54.2 NC_003387.1 + 40398 0.71 0.468714
Target:  5'- --gCGGCGAGCUGcACGUgaccuacGUCGGCg- -3'
miRNA:   3'- aaaGCUGCUCGACuUGCA-------CAGCCGgg -5'
12961 3' -54.2 NC_003387.1 + 37245 1.11 0.000953
Target:  5'- aUUUCGACGAGCUGAACGUGUCGGCCCg -3'
miRNA:   3'- -AAAGCUGCUCGACUUGCACAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.