miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 5' -60.9 NC_003387.1 + 16925 0.66 0.439895
Target:  5'- cCGAcGGCGCCgaGGCacaGCUCGg-GGCu -3'
miRNA:   3'- aGUU-CCGCGGa-CCGcg-CGAGCagCCG- -5'
12961 5' -60.9 NC_003387.1 + 25386 0.66 0.4033
Target:  5'- gUUGAGG-GCCUGGUGCuccgaaaUCG-CGGCg -3'
miRNA:   3'- -AGUUCCgCGGACCGCGcg-----AGCaGCCG- -5'
12961 5' -60.9 NC_003387.1 + 30069 0.66 0.394457
Target:  5'- aUCAGGGCcaGCgaGcaUGCGCucagUCGUCGGCg -3'
miRNA:   3'- -AGUUCCG--CGgaCc-GCGCG----AGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 19184 0.66 0.38574
Target:  5'- aUCAA--CGCCUGGCaGCGC-CGaaugugCGGCa -3'
miRNA:   3'- -AGUUccGCGGACCG-CGCGaGCa-----GCCG- -5'
12961 5' -60.9 NC_003387.1 + 20644 0.66 0.38574
Target:  5'- gCGAGGUGgC-GGUgagcgcgaacggGCGCUCGgCGGCg -3'
miRNA:   3'- aGUUCCGCgGaCCG------------CGCGAGCaGCCG- -5'
12961 5' -60.9 NC_003387.1 + 17156 0.66 0.38574
Target:  5'- cCAGGGCGCCgaGGUaguccauCGCggCGUCGuGCu -3'
miRNA:   3'- aGUUCCGCGGa-CCGc------GCGa-GCAGC-CG- -5'
12961 5' -60.9 NC_003387.1 + 11347 0.66 0.38574
Target:  5'- ---cGGCGCUcGGCcucaCGCUCGgcgUCGGCc -3'
miRNA:   3'- aguuCCGCGGaCCGc---GCGAGC---AGCCG- -5'
12961 5' -60.9 NC_003387.1 + 40139 0.66 0.38574
Target:  5'- uUCAAGGC-CCacGGCGacacCGUCGGCg -3'
miRNA:   3'- -AGUUCCGcGGa-CCGCgcgaGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 50704 0.66 0.38574
Target:  5'- -uGAuGCGCCUgGGCGCGCacaagGUCGaGCg -3'
miRNA:   3'- agUUcCGCGGA-CCGCGCGag---CAGC-CG- -5'
12961 5' -60.9 NC_003387.1 + 22435 0.66 0.4033
Target:  5'- gUCGucccAGGCGCg-GGC-CGCggCGUUGGCc -3'
miRNA:   3'- -AGU----UCCGCGgaCCGcGCGa-GCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 45853 0.66 0.4033
Target:  5'- aCGAcGGCGaCC-GGCGU-CUUGUUGGCg -3'
miRNA:   3'- aGUU-CCGC-GGaCCGCGcGAGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 17496 0.66 0.406873
Target:  5'- --cGGGCGCCgcGGCcguaGUGCUCGgccagcaugcgcagCGGCu -3'
miRNA:   3'- aguUCCGCGGa-CCG----CGCGAGCa-------------GCCG- -5'
12961 5' -60.9 NC_003387.1 + 15930 0.66 0.439895
Target:  5'- aCGucGCGg-UGGCGUGCgCGUCGGCc -3'
miRNA:   3'- aGUucCGCggACCGCGCGaGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 9715 0.66 0.439895
Target:  5'- cUCGGGGUGUUcaGCGCGUacggGUCGGCg -3'
miRNA:   3'- -AGUUCCGCGGacCGCGCGag--CAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 5858 0.66 0.438958
Target:  5'- -gGGGGCGCCgcaaccguccUGGUGCGCUucacuucucgaucCGaUCGuGCa -3'
miRNA:   3'- agUUCCGCGG----------ACCGCGCGA-------------GC-AGC-CG- -5'
12961 5' -60.9 NC_003387.1 + 26694 0.66 0.430568
Target:  5'- ---cGGCGCCgucGGCGgGUUgGU-GGCg -3'
miRNA:   3'- aguuCCGCGGa--CCGCgCGAgCAgCCG- -5'
12961 5' -60.9 NC_003387.1 + 42050 0.66 0.421358
Target:  5'- cCGAGGCgGCCgUGGuCGCaGCcgCGUCgaGGCc -3'
miRNA:   3'- aGUUCCG-CGG-ACC-GCG-CGa-GCAG--CCG- -5'
12961 5' -60.9 NC_003387.1 + 8273 0.66 0.421358
Target:  5'- ----aGCGCCUcGCGCaGCgccucgugcgCGUCGGCg -3'
miRNA:   3'- aguucCGCGGAcCGCG-CGa---------GCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 2445 0.66 0.421358
Target:  5'- cUCGAcGGCcuucacgaucaCCUcGGUGCGCaCGUCGGCc -3'
miRNA:   3'- -AGUU-CCGc----------GGA-CCGCGCGaGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 41 0.66 0.421358
Target:  5'- cCAGGGgucgcUGaCCUGcacaaaCGCGCUCGaUCGGCg -3'
miRNA:   3'- aGUUCC-----GC-GGACc-----GCGCGAGC-AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.