miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12961 5' -60.9 NC_003387.1 + 45853 0.66 0.4033
Target:  5'- aCGAcGGCGaCC-GGCGU-CUUGUUGGCg -3'
miRNA:   3'- aGUU-CCGC-GGaCCGCGcGAGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 22435 0.66 0.4033
Target:  5'- gUCGucccAGGCGCg-GGC-CGCggCGUUGGCc -3'
miRNA:   3'- -AGU----UCCGCGgaCCGcGCGa-GCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 25386 0.66 0.4033
Target:  5'- gUUGAGG-GCCUGGUGCuccgaaaUCG-CGGCg -3'
miRNA:   3'- -AGUUCCgCGGACCGCGcg-----AGCaGCCG- -5'
12961 5' -60.9 NC_003387.1 + 30069 0.66 0.394457
Target:  5'- aUCAGGGCcaGCgaGcaUGCGCucagUCGUCGGCg -3'
miRNA:   3'- -AGUUCCG--CGgaCc-GCGCG----AGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 42056 0.66 0.393579
Target:  5'- aUCGAccgcGGCGuguacgaCCUGGCGCGCgugcugCGggugccCGGCu -3'
miRNA:   3'- -AGUU----CCGC-------GGACCGCGCGa-----GCa-----GCCG- -5'
12961 5' -60.9 NC_003387.1 + 38612 0.66 0.389212
Target:  5'- aUCGAGGCGCUguucGGCccgcaggccgcgcugGCGCUgcaGUucCGGCg -3'
miRNA:   3'- -AGUUCCGCGGa---CCG---------------CGCGAg--CA--GCCG- -5'
12961 5' -60.9 NC_003387.1 + 19184 0.66 0.38574
Target:  5'- aUCAA--CGCCUGGCaGCGC-CGaaugugCGGCa -3'
miRNA:   3'- -AGUUccGCGGACCG-CGCGaGCa-----GCCG- -5'
12961 5' -60.9 NC_003387.1 + 50704 0.66 0.38574
Target:  5'- -uGAuGCGCCUgGGCGCGCacaagGUCGaGCg -3'
miRNA:   3'- agUUcCGCGGA-CCGCGCGag---CAGC-CG- -5'
12961 5' -60.9 NC_003387.1 + 40139 0.66 0.38574
Target:  5'- uUCAAGGC-CCacGGCGacacCGUCGGCg -3'
miRNA:   3'- -AGUUCCGcGGa-CCGCgcgaGCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 17156 0.66 0.38574
Target:  5'- cCAGGGCGCCgaGGUaguccauCGCggCGUCGuGCu -3'
miRNA:   3'- aGUUCCGCGGa-CCGc------GCGa-GCAGC-CG- -5'
12961 5' -60.9 NC_003387.1 + 20644 0.66 0.38574
Target:  5'- gCGAGGUGgC-GGUgagcgcgaacggGCGCUCGgCGGCg -3'
miRNA:   3'- aGUUCCGCgGaCCG------------CGCGAGCaGCCG- -5'
12961 5' -60.9 NC_003387.1 + 43703 0.66 0.38574
Target:  5'- cCGAcGGCGCCc-GCcagGUGCUCGaCGGCg -3'
miRNA:   3'- aGUU-CCGCGGacCG---CGCGAGCaGCCG- -5'
12961 5' -60.9 NC_003387.1 + 11347 0.66 0.38574
Target:  5'- ---cGGCGCUcGGCcucaCGCUCGgcgUCGGCc -3'
miRNA:   3'- aguuCCGCGGaCCGc---GCGAGC---AGCCG- -5'
12961 5' -60.9 NC_003387.1 + 38146 0.67 0.377151
Target:  5'- --cGGGCGCUUGGCGUaGaaCGgccaggCGGCg -3'
miRNA:   3'- aguUCCGCGGACCGCG-CgaGCa-----GCCG- -5'
12961 5' -60.9 NC_003387.1 + 47907 0.67 0.377151
Target:  5'- aCGAGcuuGCGCa---CGCGCUgGUCGGCg -3'
miRNA:   3'- aGUUC---CGCGgaccGCGCGAgCAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 46655 0.67 0.377151
Target:  5'- cCGGcGGuCGUCaUGGUGCGCUCGaaccugccCGGCg -3'
miRNA:   3'- aGUU-CC-GCGG-ACCGCGCGAGCa-------GCCG- -5'
12961 5' -60.9 NC_003387.1 + 15545 0.67 0.377151
Target:  5'- cUCGGGGUGCCgGGC-CGCcagC-UCGGUg -3'
miRNA:   3'- -AGUUCCGCGGaCCGcGCGa--GcAGCCG- -5'
12961 5' -60.9 NC_003387.1 + 11467 0.67 0.376299
Target:  5'- cCGGGGCGCUcaaguucaUGGCcgacaauGC-CUCGUgGGCg -3'
miRNA:   3'- aGUUCCGCGG--------ACCG-------CGcGAGCAgCCG- -5'
12961 5' -60.9 NC_003387.1 + 6312 0.67 0.360364
Target:  5'- cCGAGGuCGCCgagcugGGCG-GCcaggCGaUCGGCa -3'
miRNA:   3'- aGUUCC-GCGGa-----CCGCgCGa---GC-AGCCG- -5'
12961 5' -60.9 NC_003387.1 + 12437 0.67 0.360364
Target:  5'- aUUAGGGCGCUgccgaGGUuCGCUgG-CGGCg -3'
miRNA:   3'- -AGUUCCGCGGa----CCGcGCGAgCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.