miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12962 3' -61.5 NC_003387.1 + 1163 0.66 0.453299
Target:  5'- cGCGGUGCUuaGCggcagCGGUAgcggCGGGc -3'
miRNA:   3'- cCGCCGCGGggCGaca--GCCAUa---GCCC- -5'
12962 3' -61.5 NC_003387.1 + 49426 0.66 0.453299
Target:  5'- -uCGGCG-CCCGa-GUCGGcggccgUGUCGGGg -3'
miRNA:   3'- ccGCCGCgGGGCgaCAGCC------AUAGCCC- -5'
12962 3' -61.5 NC_003387.1 + 40114 0.66 0.453298
Target:  5'- aGGCGGCgGCCCgGC-GUCGGgcaaguUCa-- -3'
miRNA:   3'- -CCGCCG-CGGGgCGaCAGCCau----AGccc -5'
12962 3' -61.5 NC_003387.1 + 48810 0.66 0.453298
Target:  5'- cGGCGGCcaucGUCCCGCcgGUCGuGcUGcUCGGc -3'
miRNA:   3'- -CCGCCG----CGGGGCGa-CAGC-C-AU-AGCCc -5'
12962 3' -61.5 NC_003387.1 + 24071 0.66 0.447704
Target:  5'- uGGC-GCGCaacggaacugugaCGCUGUgCGGUGUCGGc -3'
miRNA:   3'- -CCGcCGCGgg-----------GCGACA-GCCAUAGCCc -5'
12962 3' -61.5 NC_003387.1 + 37908 0.66 0.443995
Target:  5'- --gGGCGaCCCGCUGccCGGUGgcUCGGc -3'
miRNA:   3'- ccgCCGCgGGGCGACa-GCCAU--AGCCc -5'
12962 3' -61.5 NC_003387.1 + 41137 0.66 0.443995
Target:  5'- uGGCaGcGCGCCgacggCCGCUG-CGaGUGUCaGGGc -3'
miRNA:   3'- -CCG-C-CGCGG-----GGCGACaGC-CAUAG-CCC- -5'
12962 3' -61.5 NC_003387.1 + 39464 0.66 0.433886
Target:  5'- uGGUGGCcuuGCCCuuggugcgcagauCGCUGUCGGccugcUCGGc -3'
miRNA:   3'- -CCGCCG---CGGG-------------GCGACAGCCau---AGCCc -5'
12962 3' -61.5 NC_003387.1 + 15264 0.66 0.431153
Target:  5'- uGGCGGCGCagcgCCGCcagcauggcaaccGUCGGcggcUUGGGg -3'
miRNA:   3'- -CCGCCGCGg---GGCGa------------CAGCCau--AGCCC- -5'
12962 3' -61.5 NC_003387.1 + 34025 0.66 0.425715
Target:  5'- uGGCGcuGCGCgaCCCGCaccugGUCGGcgUGUgGGGc -3'
miRNA:   3'- -CCGC--CGCG--GGGCGa----CAGCC--AUAgCCC- -5'
12962 3' -61.5 NC_003387.1 + 28905 0.66 0.425715
Target:  5'- cGCGGCGCCCUcacguaucuGCUGcgCGGcggCGaGGu -3'
miRNA:   3'- cCGCCGCGGGG---------CGACa-GCCauaGC-CC- -5'
12962 3' -61.5 NC_003387.1 + 24880 0.66 0.42032
Target:  5'- cGUGGCGCCgCgGCUGUCGaacucgaccgaCGGGc -3'
miRNA:   3'- cCGCCGCGG-GgCGACAGCcaua-------GCCC- -5'
12962 3' -61.5 NC_003387.1 + 13445 0.66 0.416745
Target:  5'- -uCGGCaaCCUGCUGUCGGgcaaGGGc -3'
miRNA:   3'- ccGCCGcgGGGCGACAGCCauagCCC- -5'
12962 3' -61.5 NC_003387.1 + 1421 0.66 0.416745
Target:  5'- aGGCGcCGCCgCCgacgaGCUGgcaGGgcUCGGGg -3'
miRNA:   3'- -CCGCcGCGG-GG-----CGACag-CCauAGCCC- -5'
12962 3' -61.5 NC_003387.1 + 37912 0.66 0.407892
Target:  5'- -uCGuGCGCgCCGUggGUCGGUGUCGa- -3'
miRNA:   3'- ccGC-CGCGgGGCGa-CAGCCAUAGCcc -5'
12962 3' -61.5 NC_003387.1 + 17467 0.66 0.407892
Target:  5'- cGCGGCGCCa-GUUGUCGucggcGUAcuugCGGGc -3'
miRNA:   3'- cCGCCGCGGggCGACAGC-----CAUa---GCCC- -5'
12962 3' -61.5 NC_003387.1 + 14944 0.66 0.407891
Target:  5'- aGCGGCGCaucCCCGg---UGGUAUCGGu -3'
miRNA:   3'- cCGCCGCG---GGGCgacaGCCAUAGCCc -5'
12962 3' -61.5 NC_003387.1 + 8067 0.66 0.407891
Target:  5'- uGGCGGCccGCgcuaaCCCGCUGcCGG--UCGGc -3'
miRNA:   3'- -CCGCCG--CG-----GGGCGACaGCCauAGCCc -5'
12962 3' -61.5 NC_003387.1 + 20920 0.66 0.405258
Target:  5'- cGGCGGCGaCCCGUUcGUCuauuacguucccgaGGg--CGGGu -3'
miRNA:   3'- -CCGCCGCgGGGCGA-CAG--------------CCauaGCCC- -5'
12962 3' -61.5 NC_003387.1 + 18336 0.66 0.399156
Target:  5'- uGGUcGCGCCguuuCCGUUGUCGccGUUGGGu -3'
miRNA:   3'- -CCGcCGCGG----GGCGACAGCcaUAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.