Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12963 | 3' | -51.8 | NC_003387.1 | + | 37523 | 1.04 | 0.003387 |
Target: 5'- aUUACCCGCUACUACAACGGCGUUCAAg -3' miRNA: 3'- -AAUGGGCGAUGAUGUUGCCGCAAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 8447 | 0.76 | 0.300687 |
Target: 5'- -cACCCGCUGacCUGCGGCGGCGccCAAu -3' miRNA: 3'- aaUGGGCGAU--GAUGUUGCCGCaaGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 28421 | 0.75 | 0.33345 |
Target: 5'- -gACCCgGCUGCUGCGGCGGC--UCAu -3' miRNA: 3'- aaUGGG-CGAUGAUGUUGCCGcaAGUu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 48197 | 0.72 | 0.457034 |
Target: 5'- gUGCCCGC-ACcgGCGGCGGCGgcCGAg -3' miRNA: 3'- aAUGGGCGaUGa-UGUUGCCGCaaGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 11445 | 0.71 | 0.532907 |
Target: 5'- gUGCCCGC-GCUGCAGCucgccgccggGGCGcUCAAg -3' miRNA: 3'- aAUGGGCGaUGAUGUUG----------CCGCaAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 39988 | 0.71 | 0.566821 |
Target: 5'- aUUACCCGCaguuCUACGACGGCa----- -3' miRNA: 3'- -AAUGGGCGau--GAUGUUGCCGcaaguu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 2877 | 0.71 | 0.566821 |
Target: 5'- --cCCCGCUgauccuGCUGCAGCaGGCGaUCAAc -3' miRNA: 3'- aauGGGCGA------UGAUGUUG-CCGCaAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 25053 | 0.71 | 0.566821 |
Target: 5'- gUUACCCGCgGCUGacggcCAGCGGCGUc--- -3' miRNA: 3'- -AAUGGGCGaUGAU-----GUUGCCGCAaguu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 28919 | 0.7 | 0.589738 |
Target: 5'- gUAUCUGCUGC-GCGGCGGCGaggUUCAc -3' miRNA: 3'- aAUGGGCGAUGaUGUUGCCGC---AAGUu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 4797 | 0.69 | 0.659092 |
Target: 5'- -gGCCCGCggcgacgGCcACAACGGCaagucGUUCGAc -3' miRNA: 3'- aaUGGGCGa------UGaUGUUGCCG-----CAAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 3463 | 0.69 | 0.670623 |
Target: 5'- -gACUCGCUGC-GCGGCGGCGa---- -3' miRNA: 3'- aaUGGGCGAUGaUGUUGCCGCaaguu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 1270 | 0.68 | 0.704923 |
Target: 5'- gUugCgGUgcgGCUGC-GCGGCGUUCGAc -3' miRNA: 3'- aAugGgCGa--UGAUGuUGCCGCAAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 5246 | 0.68 | 0.738514 |
Target: 5'- -gACCCGCUGgc-CGACGGCGaacUCAAc -3' miRNA: 3'- aaUGGGCGAUgauGUUGCCGCa--AGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 14901 | 0.67 | 0.7484 |
Target: 5'- -gACCUGCUGCUGCAcgacgugACGGCuGcgCGg -3' miRNA: 3'- aaUGGGCGAUGAUGU-------UGCCG-CaaGUu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 51349 | 0.67 | 0.760338 |
Target: 5'- -gACCCGCUgaGCgcCGACGGCGa---- -3' miRNA: 3'- aaUGGGCGA--UGauGUUGCCGCaaguu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 12391 | 0.67 | 0.771038 |
Target: 5'- ---gCCGCUGCUGCA--GGCGaUCAAc -3' miRNA: 3'- aaugGGCGAUGAUGUugCCGCaAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 19092 | 0.67 | 0.78158 |
Target: 5'- -aGCCUGCUGCc-UAACGGCauGUUCGGa -3' miRNA: 3'- aaUGGGCGAUGauGUUGCCG--CAAGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 33996 | 0.67 | 0.78158 |
Target: 5'- cUGCCCGCUGCU-CGACGaGUGccgCGc -3' miRNA: 3'- aAUGGGCGAUGAuGUUGC-CGCaa-GUu -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 6847 | 0.67 | 0.78158 |
Target: 5'- -cGCCCGCUcg-GCcGCGGCGcgCAGc -3' miRNA: 3'- aaUGGGCGAugaUGuUGCCGCaaGUU- -5' |
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12963 | 3' | -51.8 | NC_003387.1 | + | 18020 | 0.67 | 0.791951 |
Target: 5'- -cACCCGCgGCUguACAgcgugcccgagGCGGCGUuUCAGa -3' miRNA: 3'- aaUGGGCGaUGA--UGU-----------UGCCGCA-AGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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