Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 4797 | 0.69 | 0.659092 |
|
Target: 5'- -gGCCCGCggcgacgGCcACAACGGCaagucGUUCGAc -3' miRNA: 3'- aaUGGGCGa------UGaUGUUGCCG-----CAAGUU- -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 28919 | 0.7 | 0.589738 |
|
Target: 5'- gUAUCUGCUGC-GCGGCGGCGaggUUCAc -3' miRNA: 3'- aAUGGGCGAUGaUGUUGCCGC---AAGUu -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 39988 | 0.71 | 0.566821 |
|
Target: 5'- aUUACCCGCaguuCUACGACGGCa----- -3' miRNA: 3'- -AAUGGGCGau--GAUGUUGCCGcaaguu -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 2877 | 0.71 | 0.566821 |
|
Target: 5'- --cCCCGCUgauccuGCUGCAGCaGGCGaUCAAc -3' miRNA: 3'- aauGGGCGA------UGAUGUUG-CCGCaAGUU- -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 25053 | 0.71 | 0.566821 |
|
Target: 5'- gUUACCCGCgGCUGacggcCAGCGGCGUc--- -3' miRNA: 3'- -AAUGGGCGaUGAU-----GUUGCCGCAaguu -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 11445 | 0.71 | 0.532907 |
|
Target: 5'- gUGCCCGC-GCUGCAGCucgccgccggGGCGcUCAAg -3' miRNA: 3'- aAUGGGCGaUGAUGUUG----------CCGCaAGUU- -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 48197 | 0.72 | 0.457034 |
|
Target: 5'- gUGCCCGC-ACcgGCGGCGGCGgcCGAg -3' miRNA: 3'- aAUGGGCGaUGa-UGUUGCCGCaaGUU- -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 28421 | 0.75 | 0.33345 |
|
Target: 5'- -gACCCgGCUGCUGCGGCGGC--UCAu -3' miRNA: 3'- aaUGGG-CGAUGAUGUUGCCGcaAGUu -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 8447 | 0.76 | 0.300687 |
|
Target: 5'- -cACCCGCUGacCUGCGGCGGCGccCAAu -3' miRNA: 3'- aaUGGGCGAU--GAUGUUGCCGCaaGUU- -5' |
|||||||
| 12963 | 3' | -51.8 | NC_003387.1 | + | 37523 | 1.04 | 0.003387 |
|
Target: 5'- aUUACCCGCUACUACAACGGCGUUCAAg -3' miRNA: 3'- -AAUGGGCGAUGAUGUUGCCGCAAGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home