miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12963 5' -58.6 NC_003387.1 + 77 0.66 0.549519
Target:  5'- gCGCCG-CGGGCguuugcugGCUCGacUC-CcCUGCa -3'
miRNA:   3'- -GCGGCuGCCCGa-------CGAGU--AGuGcGACG- -5'
12963 5' -58.6 NC_003387.1 + 39716 0.66 0.549519
Target:  5'- gGCaGAuCGGGCUGCUgAcgACGCaGCg -3'
miRNA:   3'- gCGgCU-GCCCGACGAgUagUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 43700 0.66 0.549519
Target:  5'- uCGCCGACGGcGCccgccaggUGCUCGacggcggCAUGCgggaGCc -3'
miRNA:   3'- -GCGGCUGCC-CG--------ACGAGUa------GUGCGa---CG- -5'
12963 5' -58.6 NC_003387.1 + 49239 0.66 0.549519
Target:  5'- gGCCGAgcGGCUGCUCgacgccgggGUgACGC-GCa -3'
miRNA:   3'- gCGGCUgcCCGACGAG---------UAgUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 18911 0.66 0.549519
Target:  5'- cCGUCGGCGGcGC-GCUCGacccUACGCaGCu -3'
miRNA:   3'- -GCGGCUGCC-CGaCGAGUa---GUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 18315 0.66 0.549519
Target:  5'- uGCCGGCGaGuGCgucgucGCUgGUCGCGCcGUu -3'
miRNA:   3'- gCGGCUGC-C-CGa-----CGAgUAGUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 19631 0.66 0.549519
Target:  5'- gCGagaaCGGCGGGCgacGCg-GUUACGCUcGCg -3'
miRNA:   3'- -GCg---GCUGCCCGa--CGagUAGUGCGA-CG- -5'
12963 5' -58.6 NC_003387.1 + 8785 0.66 0.547412
Target:  5'- gCGgCGGCGGGCgaccugauucccGCUCAgcUCGCGCc-- -3'
miRNA:   3'- -GCgGCUGCCCGa-----------CGAGU--AGUGCGacg -5'
12963 5' -58.6 NC_003387.1 + 17746 0.66 0.539009
Target:  5'- gGCCGccAgGGGCcacaccGCUCAUCACgGCgucgGCc -3'
miRNA:   3'- gCGGC--UgCCCGa-----CGAGUAGUG-CGa---CG- -5'
12963 5' -58.6 NC_003387.1 + 35379 0.66 0.539009
Target:  5'- uCGCCGuCGccuGGCaUGCgu-UCACGCUGg -3'
miRNA:   3'- -GCGGCuGC---CCG-ACGaguAGUGCGACg -5'
12963 5' -58.6 NC_003387.1 + 30729 0.66 0.539009
Target:  5'- aGCCgGGCaGGUgacccgGCUCGUCGgGCaGCa -3'
miRNA:   3'- gCGG-CUGcCCGa-----CGAGUAGUgCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 24842 0.66 0.539009
Target:  5'- gGCUGGcCGGGCuccUGCUCGacCGCGCcgGUg -3'
miRNA:   3'- gCGGCU-GCCCG---ACGAGUa-GUGCGa-CG- -5'
12963 5' -58.6 NC_003387.1 + 3535 0.66 0.528568
Target:  5'- cCGCCGcCGccccaggcGGCUGCUCAg-GCGCUc- -3'
miRNA:   3'- -GCGGCuGC--------CCGACGAGUagUGCGAcg -5'
12963 5' -58.6 NC_003387.1 + 16202 0.66 0.528568
Target:  5'- uGCUGuCGGG--GCUCAgccUGCGCUGCc -3'
miRNA:   3'- gCGGCuGCCCgaCGAGUa--GUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 32188 0.66 0.528568
Target:  5'- aGCCGACgaacaccgcagGGGCagGCgCAUCGCuaccGCUGUu -3'
miRNA:   3'- gCGGCUG-----------CCCGa-CGaGUAGUG----CGACG- -5'
12963 5' -58.6 NC_003387.1 + 37763 0.66 0.518202
Target:  5'- uCGgCGACcucaaGGGCgUGCUCAagCGCGCcuggGCg -3'
miRNA:   3'- -GCgGCUG-----CCCG-ACGAGUa-GUGCGa---CG- -5'
12963 5' -58.6 NC_003387.1 + 24563 0.66 0.507919
Target:  5'- uCGCCGGguuCGGGCUcaacaccgacgGcCUCaAUCACGC-GCa -3'
miRNA:   3'- -GCGGCU---GCCCGA-----------C-GAG-UAGUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 27131 0.66 0.507919
Target:  5'- aCGUgGcCGGGCaGCUCAUCgagaaauccgaGCGCgucGCg -3'
miRNA:   3'- -GCGgCuGCCCGaCGAGUAG-----------UGCGa--CG- -5'
12963 5' -58.6 NC_003387.1 + 18569 0.66 0.507919
Target:  5'- gGCCGA-GGGCgacgcccuggUGCUCGUCGaguuCGC-GCa -3'
miRNA:   3'- gCGGCUgCCCG----------ACGAGUAGU----GCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 617 0.66 0.507919
Target:  5'- gGCCGAgcaGGGCgaggGCagCGUCGcCGCcGCg -3'
miRNA:   3'- gCGGCUg--CCCGa---CGa-GUAGU-GCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.