miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12963 5' -58.6 NC_003387.1 + 37560 1.1 0.000376
Target:  5'- uCGCCGACGGGCUGCUCAUCACGCUGCc -3'
miRNA:   3'- -GCGGCUGCCCGACGAGUAGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 467 0.83 0.036979
Target:  5'- gGCCGACGGcgaccggcgcgaGCUGCUCGUCGCGaUGCg -3'
miRNA:   3'- gCGGCUGCC------------CGACGAGUAGUGCgACG- -5'
12963 5' -58.6 NC_003387.1 + 48934 0.8 0.063691
Target:  5'- uGCCGGCGGGUUGCUgGcgggCGgGCUGCu -3'
miRNA:   3'- gCGGCUGCCCGACGAgUa---GUgCGACG- -5'
12963 5' -58.6 NC_003387.1 + 1211 0.79 0.07338
Target:  5'- cCGUCGACgGGGCaugGCUCGUCGaGCUGCu -3'
miRNA:   3'- -GCGGCUG-CCCGa--CGAGUAGUgCGACG- -5'
12963 5' -58.6 NC_003387.1 + 23907 0.79 0.07338
Target:  5'- gCGCCGAgGGGCUGaacgUCGUCGaGCUGCc -3'
miRNA:   3'- -GCGGCUgCCCGACg---AGUAGUgCGACG- -5'
12963 5' -58.6 NC_003387.1 + 21482 0.77 0.097157
Target:  5'- gCGCCGGucgggcCGGGCUgGUUCGUguCGCUGCa -3'
miRNA:   3'- -GCGGCU------GCCCGA-CGAGUAguGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 19139 0.77 0.108579
Target:  5'- -cCCGAcCGGGCggugGCUCGUCgACGCUGUc -3'
miRNA:   3'- gcGGCU-GCCCGa---CGAGUAG-UGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 3688 0.76 0.116025
Target:  5'- gGCCGAgGGGCUGCgguUCAUCaccgacgccuauccgGCGCUGa -3'
miRNA:   3'- gCGGCUgCCCGACG---AGUAG---------------UGCGACg -5'
12963 5' -58.6 NC_003387.1 + 16984 0.76 0.12125
Target:  5'- gCGCgGGCGGGCUGCgUCAUCGaccccgaGCggGCg -3'
miRNA:   3'- -GCGgCUGCCCGACG-AGUAGUg------CGa-CG- -5'
12963 5' -58.6 NC_003387.1 + 3930 0.75 0.13789
Target:  5'- aCGCCcgGugGGcGCUGCUgCAgaacgacccgguggUCGCGCUGCa -3'
miRNA:   3'- -GCGG--CugCC-CGACGA-GU--------------AGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 44440 0.74 0.163481
Target:  5'- cCGCCGACgcgcacgaGGcGCUGCgCGagGCGCUGCa -3'
miRNA:   3'- -GCGGCUG--------CC-CGACGaGUagUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 37445 0.74 0.177112
Target:  5'- cCGCCGACGGuuGCcaUGCUgGcgGCGCUGCg -3'
miRNA:   3'- -GCGGCUGCC--CG--ACGAgUagUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 8105 0.74 0.177112
Target:  5'- cCGcCCGA-GGGCgagcccaGCUCGUaCGCGCUGCu -3'
miRNA:   3'- -GC-GGCUgCCCGa------CGAGUA-GUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 42726 0.74 0.181876
Target:  5'- aCGCCGACcugcucgucaGGGCgUGCUCGgaUCG-GCUGCg -3'
miRNA:   3'- -GCGGCUG----------CCCG-ACGAGU--AGUgCGACG- -5'
12963 5' -58.6 NC_003387.1 + 19512 0.73 0.186753
Target:  5'- uCGCCGAgCGGGC--CUCGcgcUUGCGCUGCg -3'
miRNA:   3'- -GCGGCU-GCCCGacGAGU---AGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 18412 0.73 0.191745
Target:  5'- gGCCGcgggcagcGCGGGCUGCUCGggcagcCACGUguacGCg -3'
miRNA:   3'- gCGGC--------UGCCCGACGAGUa-----GUGCGa---CG- -5'
12963 5' -58.6 NC_003387.1 + 12974 0.73 0.196853
Target:  5'- gGUCGGCGaGCUGgUCGUCgauaaucucGCGCUGCg -3'
miRNA:   3'- gCGGCUGCcCGACgAGUAG---------UGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 20482 0.73 0.20208
Target:  5'- gGCCaGGCGgucGGCcaGCUCGUCGCGCUcGCg -3'
miRNA:   3'- gCGG-CUGC---CCGa-CGAGUAGUGCGA-CG- -5'
12963 5' -58.6 NC_003387.1 + 36886 0.73 0.212895
Target:  5'- uCGCCGACGGGCaccGCgucggCGUCACaaccgGCgGCg -3'
miRNA:   3'- -GCGGCUGCCCGa--CGa----GUAGUG-----CGaCG- -5'
12963 5' -58.6 NC_003387.1 + 10093 0.72 0.224205
Target:  5'- uGCCGGCGGuuUGCUCGg---GCUGCa -3'
miRNA:   3'- gCGGCUGCCcgACGAGUagugCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.