miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12963 5' -58.6 NC_003387.1 + 29721 0.66 0.497722
Target:  5'- aGCCGgugauGCGGGCcuUGCcgUCGUCGgCGCcGCc -3'
miRNA:   3'- gCGGC-----UGCCCG--ACG--AGUAGU-GCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 45949 0.66 0.497722
Target:  5'- uCGCCGACGGcccGCgcaaggGCgaggCGU-GCGCUGUg -3'
miRNA:   3'- -GCGGCUGCC---CGa-----CGa---GUAgUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 41101 0.66 0.497722
Target:  5'- aGCCG-CGaGCUGCUg---GCGCUGCa -3'
miRNA:   3'- gCGGCuGCcCGACGAguagUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 39575 0.66 0.497722
Target:  5'- -cUCGACGGcCUGU---UCGCGCUGCg -3'
miRNA:   3'- gcGGCUGCCcGACGaguAGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 10773 0.67 0.487619
Target:  5'- uCGCUGGCGGcCUGCaUCGUCGgGUcgucgGCg -3'
miRNA:   3'- -GCGGCUGCCcGACG-AGUAGUgCGa----CG- -5'
12963 5' -58.6 NC_003387.1 + 28759 0.67 0.487619
Target:  5'- aGCCGccCGGcGCUGCgCA-CGUGCUGCa -3'
miRNA:   3'- gCGGCu-GCC-CGACGaGUaGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 34289 0.67 0.487619
Target:  5'- gCGCgCGuacACGuGGCUGCccgagCAgccCGCGCUGCc -3'
miRNA:   3'- -GCG-GC---UGC-CCGACGa----GUa--GUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 16018 0.67 0.487619
Target:  5'- cCGCCGACGGuuucauGCaGCUUAUCgGCGUcacugGCg -3'
miRNA:   3'- -GCGGCUGCC------CGaCGAGUAG-UGCGa----CG- -5'
12963 5' -58.6 NC_003387.1 + 2031 0.67 0.487619
Target:  5'- cCGCCGAC-GGCcGC-CGUCGCcgaGCUGg -3'
miRNA:   3'- -GCGGCUGcCCGaCGaGUAGUG---CGACg -5'
12963 5' -58.6 NC_003387.1 + 28048 0.67 0.486614
Target:  5'- aGCUGACGaccaaguGGCUcGcCUCGUacuCGCUGCg -3'
miRNA:   3'- gCGGCUGC-------CCGA-C-GAGUAgu-GCGACG- -5'
12963 5' -58.6 NC_003387.1 + 45582 0.67 0.477613
Target:  5'- gGCCGAggagcCGGGCcucgcgugGCUgAUCGaccgGCUGCa -3'
miRNA:   3'- gCGGCU-----GCCCGa-------CGAgUAGUg---CGACG- -5'
12963 5' -58.6 NC_003387.1 + 24902 0.67 0.477613
Target:  5'- uCGaCCGACGGGCgguacuuCUCGUCGgGCaccGCc -3'
miRNA:   3'- -GC-GGCUGCCCGac-----GAGUAGUgCGa--CG- -5'
12963 5' -58.6 NC_003387.1 + 48082 0.67 0.477613
Target:  5'- gCGCCucGACGGGUgGCgcugC-CGCUGCg -3'
miRNA:   3'- -GCGG--CUGCCCGaCGaguaGuGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 18691 0.67 0.467709
Target:  5'- aCGCCGACcaGgUGCggGUCGCGCaGCg -3'
miRNA:   3'- -GCGGCUGccCgACGagUAGUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 44666 0.67 0.467709
Target:  5'- gGCCGAgGGGCUGC-CGg--UGCUcGCc -3'
miRNA:   3'- gCGGCUgCCCGACGaGUaguGCGA-CG- -5'
12963 5' -58.6 NC_003387.1 + 1714 0.67 0.457913
Target:  5'- uCGCUGAgCGGGCcggGCggcgCAUCcCGgUGCu -3'
miRNA:   3'- -GCGGCU-GCCCGa--CGa---GUAGuGCgACG- -5'
12963 5' -58.6 NC_003387.1 + 34519 0.67 0.457913
Target:  5'- gCGCCGcgauccuCGGGCUGCcCGUCGaccCGCUc- -3'
miRNA:   3'- -GCGGCu------GCCCGACGaGUAGU---GCGAcg -5'
12963 5' -58.6 NC_003387.1 + 16274 0.67 0.457913
Target:  5'- gCGCCugGGCGaGCUGCUCgcgcGUCACGaacgGCa -3'
miRNA:   3'- -GCGG--CUGCcCGACGAG----UAGUGCga--CG- -5'
12963 5' -58.6 NC_003387.1 + 33425 0.67 0.456939
Target:  5'- aCGCCGAgcuggauCGGGCUGCcCgaggcgGUCAgGCcGCu -3'
miRNA:   3'- -GCGGCU-------GCCCGACGaG------UAGUgCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 48491 0.67 0.456939
Target:  5'- gGCCGucgcgGCGGGCcugcagguaauccUGCUCc-CACuGCUGCa -3'
miRNA:   3'- gCGGC-----UGCCCG-------------ACGAGuaGUG-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.