miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12963 5' -58.6 NC_003387.1 + 77 0.66 0.549519
Target:  5'- gCGCCG-CGGGCguuugcugGCUCGacUC-CcCUGCa -3'
miRNA:   3'- -GCGGCuGCCCGa-------CGAGU--AGuGcGACG- -5'
12963 5' -58.6 NC_003387.1 + 467 0.83 0.036979
Target:  5'- gGCCGACGGcgaccggcgcgaGCUGCUCGUCGCGaUGCg -3'
miRNA:   3'- gCGGCUGCC------------CGACGAGUAGUGCgACG- -5'
12963 5' -58.6 NC_003387.1 + 617 0.66 0.507919
Target:  5'- gGCCGAgcaGGGCgaggGCagCGUCGcCGCcGCg -3'
miRNA:   3'- gCGGCUg--CCCGa---CGa-GUAGU-GCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 1211 0.79 0.07338
Target:  5'- cCGUCGACgGGGCaugGCUCGUCGaGCUGCu -3'
miRNA:   3'- -GCGGCUG-CCCGa--CGAGUAGUgCGACG- -5'
12963 5' -58.6 NC_003387.1 + 1714 0.67 0.457913
Target:  5'- uCGCUGAgCGGGCcggGCggcgCAUCcCGgUGCu -3'
miRNA:   3'- -GCGGCU-GCCCGa--CGa---GUAGuGCgACG- -5'
12963 5' -58.6 NC_003387.1 + 2031 0.67 0.487619
Target:  5'- cCGCCGAC-GGCcGC-CGUCGCcgaGCUGg -3'
miRNA:   3'- -GCGGCUGcCCGaCGaGUAGUG---CGACg -5'
12963 5' -58.6 NC_003387.1 + 2516 0.69 0.357304
Target:  5'- aCGCCGACugaugagGGGCcggUGUUCcgCACGCgGUc -3'
miRNA:   3'- -GCGGCUG-------CCCG---ACGAGuaGUGCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 2918 0.7 0.30305
Target:  5'- gGCCG-CGGGCgagGCUCucGUCGaaCUGCg -3'
miRNA:   3'- gCGGCuGCCCGa--CGAG--UAGUgcGACG- -5'
12963 5' -58.6 NC_003387.1 + 3535 0.66 0.528568
Target:  5'- cCGCCGcCGccccaggcGGCUGCUCAg-GCGCUc- -3'
miRNA:   3'- -GCGGCuGC--------CCGACGAGUagUGCGAcg -5'
12963 5' -58.6 NC_003387.1 + 3688 0.76 0.116025
Target:  5'- gGCCGAgGGGCUGCgguUCAUCaccgacgccuauccgGCGCUGa -3'
miRNA:   3'- gCGGCUgCCCGACG---AGUAG---------------UGCGACg -5'
12963 5' -58.6 NC_003387.1 + 3856 0.72 0.224205
Target:  5'- gCGCCGACGauccGGCUGCgcaccagggCGUgCACGCcgUGCg -3'
miRNA:   3'- -GCGGCUGC----CCGACGa--------GUA-GUGCG--ACG- -5'
12963 5' -58.6 NC_003387.1 + 3930 0.75 0.13789
Target:  5'- aCGCCcgGugGGcGCUGCUgCAgaacgacccgguggUCGCGCUGCa -3'
miRNA:   3'- -GCGG--CugCC-CGACGA-GU--------------AGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 4569 0.7 0.30305
Target:  5'- gCGaCCGcGCGGGC--CUCGguggCGCGCUGCg -3'
miRNA:   3'- -GC-GGC-UGCCCGacGAGUa---GUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 6515 0.67 0.452088
Target:  5'- gCGUCGGCcGGGUgggcaccugacacccUGCugUCGUCccugGCGCUGCg -3'
miRNA:   3'- -GCGGCUG-CCCG---------------ACG--AGUAG----UGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 6640 0.69 0.375115
Target:  5'- gGCCGucuUGGGCUcgucgucgacccGCUCAagcgcggUGCGCUGCa -3'
miRNA:   3'- gCGGCu--GCCCGA------------CGAGUa------GUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 6813 0.68 0.410662
Target:  5'- uGCCGACGuaCUGCagAUCGgGCgGCa -3'
miRNA:   3'- gCGGCUGCccGACGagUAGUgCGaCG- -5'
12963 5' -58.6 NC_003387.1 + 7268 0.69 0.333699
Target:  5'- cCGCUGACGGGUucgGCgugacguUCACGCccgGCg -3'
miRNA:   3'- -GCGGCUGCCCGa--CGagu----AGUGCGa--CG- -5'
12963 5' -58.6 NC_003387.1 + 8105 0.74 0.177112
Target:  5'- cCGcCCGA-GGGCgagcccaGCUCGUaCGCGCUGCu -3'
miRNA:   3'- -GC-GGCUgCCCGa------CGAGUA-GUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 8232 0.69 0.358138
Target:  5'- aCGCCGAUcuGCUGCa---CGCGCUGCu -3'
miRNA:   3'- -GCGGCUGccCGACGaguaGUGCGACG- -5'
12963 5' -58.6 NC_003387.1 + 8297 0.68 0.429202
Target:  5'- gCGUCGGCGGGCag--CAUCGCGa-GCa -3'
miRNA:   3'- -GCGGCUGCCCGacgaGUAGUGCgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.