Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12963 | 5' | -58.6 | NC_003387.1 | + | 37560 | 1.1 | 0.000376 |
Target: 5'- uCGCCGACGGGCUGCUCAUCACGCUGCc -3' miRNA: 3'- -GCGGCUGCCCGACGAGUAGUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 20293 | 0.71 | 0.281516 |
Target: 5'- aGCCGAgcUGGGCUGCUaCGUCAacg-GCg -3' miRNA: 3'- gCGGCU--GCCCGACGA-GUAGUgcgaCG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 19858 | 0.7 | 0.30305 |
Target: 5'- aCGCCGACGcGGC-GCUgGgCGCcCUGCa -3' miRNA: 3'- -GCGGCUGC-CCGaCGAgUaGUGcGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 18911 | 0.66 | 0.549519 |
Target: 5'- cCGUCGGCGGcGC-GCUCGacccUACGCaGCu -3' miRNA: 3'- -GCGGCUGCC-CGaCGAGUa---GUGCGaCG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 19139 | 0.77 | 0.108579 |
Target: 5'- -cCCGAcCGGGCggugGCUCGUCgACGCUGUc -3' miRNA: 3'- gcGGCU-GCCCGa---CGAGUAG-UGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 3688 | 0.76 | 0.116025 |
Target: 5'- gGCCGAgGGGCUGCgguUCAUCaccgacgccuauccgGCGCUGa -3' miRNA: 3'- gCGGCUgCCCGACG---AGUAG---------------UGCGACg -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 3930 | 0.75 | 0.13789 |
Target: 5'- aCGCCcgGugGGcGCUGCUgCAgaacgacccgguggUCGCGCUGCa -3' miRNA: 3'- -GCGG--CugCC-CGACGA-GU--------------AGUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 44440 | 0.74 | 0.163481 |
Target: 5'- cCGCCGACgcgcacgaGGcGCUGCgCGagGCGCUGCa -3' miRNA: 3'- -GCGGCUG--------CC-CGACGaGUagUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 42726 | 0.74 | 0.181876 |
Target: 5'- aCGCCGACcugcucgucaGGGCgUGCUCGgaUCG-GCUGCg -3' miRNA: 3'- -GCGGCUG----------CCCG-ACGAGU--AGUgCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 37345 | 0.71 | 0.274613 |
Target: 5'- cCGCCG-CGGGCUGCgcUAUC-UGCgGCa -3' miRNA: 3'- -GCGGCuGCCCGACGa-GUAGuGCGaCG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 17416 | 0.72 | 0.230048 |
Target: 5'- aCGCCGuCaGGCUGUUUcaaACGCUGCu -3' miRNA: 3'- -GCGGCuGcCCGACGAGuagUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 37445 | 0.74 | 0.177112 |
Target: 5'- cCGCCGACGGuuGCcaUGCUgGcgGCGCUGCg -3' miRNA: 3'- -GCGGCUGCC--CG--ACGAgUagUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 467 | 0.83 | 0.036979 |
Target: 5'- gGCCGACGGcgaccggcgcgaGCUGCUCGUCGCGaUGCg -3' miRNA: 3'- gCGGCUGCC------------CGACGAGUAGUGCgACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 12422 | 0.71 | 0.261215 |
Target: 5'- cCGCUGugGGaGCUGaUUAggGCGCUGCc -3' miRNA: 3'- -GCGGCugCC-CGACgAGUagUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 23907 | 0.79 | 0.07338 |
Target: 5'- gCGCCGAgGGGCUGaacgUCGUCGaGCUGCc -3' miRNA: 3'- -GCGGCUgCCCGACg---AGUAGUgCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 8105 | 0.74 | 0.177112 |
Target: 5'- cCGcCCGA-GGGCgagcccaGCUCGUaCGCGCUGCu -3' miRNA: 3'- -GC-GGCUgCCCGa------CGAGUA-GUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 46204 | 0.71 | 0.274613 |
Target: 5'- aGCgCGACGGGCg--UCGgaaCAUGCUGCa -3' miRNA: 3'- gCG-GCUGCCCGacgAGUa--GUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 13772 | 0.7 | 0.288556 |
Target: 5'- gGCCGGuCGGuaUGgaCccgGUCGCGCUGCg -3' miRNA: 3'- gCGGCU-GCCcgACgaG---UAGUGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 21482 | 0.77 | 0.097157 |
Target: 5'- gCGCCGGucgggcCGGGCUgGUUCGUguCGCUGCa -3' miRNA: 3'- -GCGGCU------GCCCGA-CGAGUAguGCGACG- -5' |
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12963 | 5' | -58.6 | NC_003387.1 | + | 16984 | 0.76 | 0.12125 |
Target: 5'- gCGCgGGCGGGCUGCgUCAUCGaccccgaGCggGCg -3' miRNA: 3'- -GCGgCUGCCCGACG-AGUAGUg------CGa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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