miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12964 5' -59.6 NC_003387.1 + 30972 0.66 0.536835
Target:  5'- uCGGugG-CGCUGACgCCGagcgccucgGCGACGAu -3'
miRNA:   3'- -GCCugCuGCGGCUG-GGCg--------CGCUGUUc -5'
12964 5' -59.6 NC_003387.1 + 21334 0.66 0.536835
Target:  5'- aCGGGCGAUuuCgGACCCGCcccuaauaGACAGGa -3'
miRNA:   3'- -GCCUGCUGc-GgCUGGGCGcg------CUGUUC- -5'
12964 5' -59.6 NC_003387.1 + 20186 0.66 0.536835
Target:  5'- cCGGACGGCGCCG-CCgugaacuacgcaUGCGCucgGAUGAa -3'
miRNA:   3'- -GCCUGCUGCGGCuGG------------GCGCG---CUGUUc -5'
12964 5' -59.6 NC_003387.1 + 10650 0.66 0.536835
Target:  5'- gGGuACGGCGuUCGGCCuCGaCGCGGCu-- -3'
miRNA:   3'- gCC-UGCUGC-GGCUGG-GC-GCGCUGuuc -5'
12964 5' -59.6 NC_003387.1 + 12597 0.66 0.535812
Target:  5'- uGGGCcuugaacuugcccGACGCCGGgCCGcCGCcuGCGAGg -3'
miRNA:   3'- gCCUG-------------CUGCGGCUgGGC-GCGc-UGUUC- -5'
12964 5' -59.6 NC_003387.1 + 45764 0.66 0.535812
Target:  5'- aGGGCGcgcugugGCGCCuGCCCGCcgcuGCG-CAGGc -3'
miRNA:   3'- gCCUGC-------UGCGGcUGGGCG----CGCuGUUC- -5'
12964 5' -59.6 NC_003387.1 + 40237 0.66 0.530707
Target:  5'- uGGGCuguagguucugcucgGACGCCaGGCCCGCG-GcCAGGc -3'
miRNA:   3'- gCCUG---------------CUGCGG-CUGGGCGCgCuGUUC- -5'
12964 5' -59.6 NC_003387.1 + 311 0.66 0.526635
Target:  5'- cCGGugGA-GCCcgaGCCCG-GCGACAc- -3'
miRNA:   3'- -GCCugCUgCGGc--UGGGCgCGCUGUuc -5'
12964 5' -59.6 NC_003387.1 + 13146 0.66 0.526635
Target:  5'- -uGAgGACGCCGAgcaCCGCGUGcAgAAGg -3'
miRNA:   3'- gcCUgCUGCGGCUg--GGCGCGC-UgUUC- -5'
12964 5' -59.6 NC_003387.1 + 7608 0.66 0.526635
Target:  5'- uGGACGcACGgCGACCaagugaccgaUGCGCGggggcGCAAGu -3'
miRNA:   3'- gCCUGC-UGCgGCUGG----------GCGCGC-----UGUUC- -5'
12964 5' -59.6 NC_003387.1 + 7825 0.66 0.526635
Target:  5'- gCGGcCGAgGUCGcCCgGCGCG-CAGGc -3'
miRNA:   3'- -GCCuGCUgCGGCuGGgCGCGCuGUUC- -5'
12964 5' -59.6 NC_003387.1 + 1807 0.66 0.526635
Target:  5'- aGG-UGAaGCUGACCgGCGCGGCc-- -3'
miRNA:   3'- gCCuGCUgCGGCUGGgCGCGCUGuuc -5'
12964 5' -59.6 NC_003387.1 + 52264 0.66 0.526635
Target:  5'- cCGGuCGcCGUCGGCcgCCGCGgCGGCGAc -3'
miRNA:   3'- -GCCuGCuGCGGCUG--GGCGC-GCUGUUc -5'
12964 5' -59.6 NC_003387.1 + 37738 0.66 0.526635
Target:  5'- -uGAUGuGCGCC-ACCgUGCGCGGCGGGa -3'
miRNA:   3'- gcCUGC-UGCGGcUGG-GCGCGCUGUUC- -5'
12964 5' -59.6 NC_003387.1 + 44879 0.66 0.526635
Target:  5'- gGGGCGuCGgCGauuccGCCUGCGCGcCGGGc -3'
miRNA:   3'- gCCUGCuGCgGC-----UGGGCGCGCuGUUC- -5'
12964 5' -59.6 NC_003387.1 + 27541 0.66 0.526635
Target:  5'- gCGGcgGCGGCGCCGGggccaCCGCGC--CGAGc -3'
miRNA:   3'- -GCC--UGCUGCGGCUg----GGCGCGcuGUUC- -5'
12964 5' -59.6 NC_003387.1 + 4482 0.66 0.526635
Target:  5'- uGGcCG-CgGCCGACCgGgCGCGACAc- -3'
miRNA:   3'- gCCuGCuG-CGGCUGGgC-GCGCUGUuc -5'
12964 5' -59.6 NC_003387.1 + 47566 0.66 0.52359
Target:  5'- aCGGAuugacugcaccgacCGGCGCCGagcGCCCcucgucgcGUGCGGCGAu -3'
miRNA:   3'- -GCCU--------------GCUGCGGC---UGGG--------CGCGCUGUUc -5'
12964 5' -59.6 NC_003387.1 + 4278 0.66 0.516509
Target:  5'- gCGGGCGAUGgaGGCCgCGgGCGAgCAGc -3'
miRNA:   3'- -GCCUGCUGCggCUGG-GCgCGCU-GUUc -5'
12964 5' -59.6 NC_003387.1 + 17569 0.66 0.516509
Target:  5'- aGGGCGACaacgccccgcugGUCGACCUGCaGUGGCc-- -3'
miRNA:   3'- gCCUGCUG------------CGGCUGGGCG-CGCUGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.