miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12966 3' -52.5 NC_003387.1 + 25165 0.66 0.884242
Target:  5'- uCGUGuCAGCGGCccGAGG-CGgUCaGCGAGg -3'
miRNA:   3'- -GCAU-GUCGCUG--UUCCaGC-AGcUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 41854 0.66 0.884242
Target:  5'- --aGCGGcCGACGGcGGUCGU-GAUGAGc -3'
miRNA:   3'- gcaUGUC-GCUGUU-CCAGCAgCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 8828 0.66 0.884242
Target:  5'- gGUGCGcugcGCGACAAGuUCG-CGAuCGAGu -3'
miRNA:   3'- gCAUGU----CGCUGUUCcAGCaGCU-GCUC- -5'
12966 3' -52.5 NC_003387.1 + 33664 0.66 0.884242
Target:  5'- cCGUGgcccUGGCGGCGAuGGUCGaccucgacUCGGCGAc -3'
miRNA:   3'- -GCAU----GUCGCUGUU-CCAGC--------AGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 1166 0.66 0.876582
Target:  5'- gGUGCuuAGCGGCAGcGGUag-CGGCGGGn -3'
miRNA:   3'- gCAUG--UCGCUGUU-CCAgcaGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 50601 0.66 0.876582
Target:  5'- aCGU-CGGCcGCuGGGgCGUCGGCGAu -3'
miRNA:   3'- -GCAuGUCGcUGuUCCaGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 41285 0.66 0.876582
Target:  5'- uCG-ACGGCGACGAGcGaaaCcUCGACGAGc -3'
miRNA:   3'- -GCaUGUCGCUGUUC-Ca--GcAGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 17460 0.66 0.876582
Target:  5'- uCGUACccGCGGCGccAGuuGUCGUCGGCGu- -3'
miRNA:   3'- -GCAUGu-CGCUGU--UC--CAGCAGCUGCuc -5'
12966 3' -52.5 NC_003387.1 + 26690 0.66 0.876582
Target:  5'- uGUGCGGCGcCGucggcGGGUUGguggCGAUGAa -3'
miRNA:   3'- gCAUGUCGCuGU-----UCCAGCa---GCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 14345 0.66 0.871862
Target:  5'- uCGUGCAGCaccaggauGAuguugucgagcuuguCGAGGgccUCGUCGACGAc -3'
miRNA:   3'- -GCAUGUCG--------CU---------------GUUCC---AGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 10778 0.66 0.868665
Target:  5'- --gGCGGCcuGCAucgucGGGUCGUCGGCGu- -3'
miRNA:   3'- gcaUGUCGc-UGU-----UCCAGCAGCUGCuc -5'
12966 3' -52.5 NC_003387.1 + 23898 0.66 0.868665
Target:  5'- aCGUGCugcGCGcCGAGGggcugaaCGUCGuCGAGc -3'
miRNA:   3'- -GCAUGu--CGCuGUUCCa------GCAGCuGCUC- -5'
12966 3' -52.5 NC_003387.1 + 33023 0.66 0.868665
Target:  5'- aCGUucACgAGCuGCGAGG-CGUCGaACGAGc -3'
miRNA:   3'- -GCA--UG-UCGcUGUUCCaGCAGC-UGCUC- -5'
12966 3' -52.5 NC_003387.1 + 38511 0.66 0.868665
Target:  5'- gCGUGCgagGGCGGCAAGugagCGcCGACGGc -3'
miRNA:   3'- -GCAUG---UCGCUGUUCca--GCaGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 1442 0.66 0.860498
Target:  5'- --gGCAGgGcuCGGGGUCGUCGuccucguCGAGg -3'
miRNA:   3'- gcaUGUCgCu-GUUCCAGCAGCu------GCUC- -5'
12966 3' -52.5 NC_003387.1 + 6760 0.66 0.858001
Target:  5'- --cACAGCGcACGccucgcccuugcgcGGGcCGUCGGCGAa -3'
miRNA:   3'- gcaUGUCGC-UGU--------------UCCaGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 9164 0.66 0.852089
Target:  5'- aGUACAGCGACGAcGG-CGUCa----- -3'
miRNA:   3'- gCAUGUCGCUGUU-CCaGCAGcugcuc -5'
12966 3' -52.5 NC_003387.1 + 31713 0.66 0.852089
Target:  5'- uGUugACAGCccGGCGcuGUCGcCGACGAGa -3'
miRNA:   3'- gCA--UGUCG--CUGUucCAGCaGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 50473 0.66 0.852089
Target:  5'- ---cCGGCccGCGAGGUCGUCGGCa-- -3'
miRNA:   3'- gcauGUCGc-UGUUCCAGCAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 11415 0.67 0.843446
Target:  5'- --cAUGGCGAUGAGGUUGcgcUCGuCGAGg -3'
miRNA:   3'- gcaUGUCGCUGUUCCAGC---AGCuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.