miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12966 3' -52.5 NC_003387.1 + 38334 1.1 0.001797
Target:  5'- cCGUACAGCGACAAGGUCGUCGACGAGg -3'
miRNA:   3'- -GCAUGUCGCUGUUCCAGCAGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 45095 0.79 0.217835
Target:  5'- uGUuCGGCGGCcAGGUCGUCGACGc- -3'
miRNA:   3'- gCAuGUCGCUGuUCCAGCAGCUGCuc -5'
12966 3' -52.5 NC_003387.1 + 1194 0.78 0.248504
Target:  5'- --cGCAGgGGCAAGGguggcCGUCGACGGGg -3'
miRNA:   3'- gcaUGUCgCUGUUCCa----GCAGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 42861 0.78 0.275541
Target:  5'- uCGUGCAGuCGAuCAAGGUCGagGACGGc -3'
miRNA:   3'- -GCAUGUC-GCU-GUUCCAGCagCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 41248 0.77 0.282658
Target:  5'- --gGCGGCGACAAGGUCGU-GACGc- -3'
miRNA:   3'- gcaUGUCGCUGUUCCAGCAgCUGCuc -5'
12966 3' -52.5 NC_003387.1 + 19327 0.77 0.304879
Target:  5'- aGUACAGCGACGAG--CG-CGGCGAGa -3'
miRNA:   3'- gCAUGUCGCUGUUCcaGCaGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 25370 0.77 0.3157
Target:  5'- --aAgAGCGGCGAGGUCGaggggcugcggcugcUCGACGAGa -3'
miRNA:   3'- gcaUgUCGCUGUUCCAGC---------------AGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 44376 0.75 0.396651
Target:  5'- cCGaACAGCGGCAcgucgGGGUCGUCGAggucggcCGGGc -3'
miRNA:   3'- -GCaUGUCGCUGU-----UCCAGCAGCU-------GCUC- -5'
12966 3' -52.5 NC_003387.1 + 39961 0.72 0.517055
Target:  5'- aGUACgAGCG-CGAGGUCGcgcaCGACGAu -3'
miRNA:   3'- gCAUG-UCGCuGUUCCAGCa---GCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 50133 0.72 0.560097
Target:  5'- gCGUACuGCGGCcAGG-CGUCGAcCGAc -3'
miRNA:   3'- -GCAUGuCGCUGuUCCaGCAGCU-GCUc -5'
12966 3' -52.5 NC_003387.1 + 24131 0.71 0.58971
Target:  5'- cCGUAC-GCGGCGguguugagcuugagGGcGUCGUCGACGGc -3'
miRNA:   3'- -GCAUGuCGCUGU--------------UC-CAGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 9628 0.71 0.593019
Target:  5'- -cUGCAGCGACAAGGcUC-UCGACa-- -3'
miRNA:   3'- gcAUGUCGCUGUUCC-AGcAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 3472 0.71 0.626241
Target:  5'- --cGCGGCGGCGAGGUgaaaucgcuUGUCGACa-- -3'
miRNA:   3'- gcaUGUCGCUGUUCCA---------GCAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 46745 0.7 0.636229
Target:  5'- --cACGGCGGCAaccuggccGGGUCGagcgacucgcgguUCGGCGAGc -3'
miRNA:   3'- gcaUGUCGCUGU--------UCCAGC-------------AGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 46059 0.7 0.659509
Target:  5'- -cUGCAGCG-CAccgcgcuugagcGGGUCGaCGACGAGc -3'
miRNA:   3'- gcAUGUCGCuGU------------UCCAGCaGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 20049 0.7 0.681576
Target:  5'- aCGUGC-GCGGCGAGGUUcagcUCGGCGuGc -3'
miRNA:   3'- -GCAUGuCGCUGUUCCAGc---AGCUGCuC- -5'
12966 3' -52.5 NC_003387.1 + 29530 0.69 0.690354
Target:  5'- aGUGgAaCGGCAAGGUCGaccgggcaugagCGACGAGg -3'
miRNA:   3'- gCAUgUcGCUGUUCCAGCa-----------GCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 33985 0.69 0.692543
Target:  5'- --cGCAGCGGguCGcGGUCGaCGACGAGc -3'
miRNA:   3'- gcaUGUCGCU--GUuCCAGCaGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 15154 0.69 0.702363
Target:  5'- gCGUACAccuaccucgacgcGCGccGCGAGGUgaUCGACGAGg -3'
miRNA:   3'- -GCAUGU-------------CGC--UGUUCCAgcAGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 21223 0.69 0.709962
Target:  5'- gCGUGCgggcgcagGGCGAUccGGUCGgcauggugcgccgCGACGAGg -3'
miRNA:   3'- -GCAUG--------UCGCUGuuCCAGCa------------GCUGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.