miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12966 3' -52.5 NC_003387.1 + 313 0.68 0.787184
Target:  5'- aCG-ACAGCGGguCGAGGUgGUCGGCc-- -3'
miRNA:   3'- -GCaUGUCGCU--GUUCCAgCAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 1166 0.66 0.876582
Target:  5'- gGUGCuuAGCGGCAGcGGUag-CGGCGGGn -3'
miRNA:   3'- gCAUG--UCGCUGUU-CCAgcaGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 1194 0.78 0.248504
Target:  5'- --cGCAGgGGCAAGGguggcCGUCGACGGGg -3'
miRNA:   3'- gcaUGUCgCUGUUCCa----GCAGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 1442 0.66 0.860498
Target:  5'- --gGCAGgGcuCGGGGUCGUCGuccucguCGAGg -3'
miRNA:   3'- gcaUGUCgCu-GUUCCAGCAGCu------GCUC- -5'
12966 3' -52.5 NC_003387.1 + 3349 0.67 0.80671
Target:  5'- uCGUuuGGCGc---GGUCGUCGACGGc -3'
miRNA:   3'- -GCAugUCGCuguuCCAGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 3472 0.71 0.626241
Target:  5'- --cGCGGCGGCGAGGUgaaaucgcuUGUCGACa-- -3'
miRNA:   3'- gcaUGUCGCUGUUCCA---------GCAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 6760 0.66 0.858001
Target:  5'- --cACAGCGcACGccucgcccuugcgcGGGcCGUCGGCGAa -3'
miRNA:   3'- gcaUGUCGC-UGU--------------UCCaGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 7936 0.67 0.843446
Target:  5'- aGUGCGGCGAuCAAGGcCGaaaucaaGACGGc -3'
miRNA:   3'- gCAUGUCGCU-GUUCCaGCag-----CUGCUc -5'
12966 3' -52.5 NC_003387.1 + 8828 0.66 0.884242
Target:  5'- gGUGCGcugcGCGACAAGuUCG-CGAuCGAGu -3'
miRNA:   3'- gCAUGU----CGCUGUUCcAGCaGCU-GCUC- -5'
12966 3' -52.5 NC_003387.1 + 9164 0.66 0.852089
Target:  5'- aGUACAGCGACGAcGG-CGUCa----- -3'
miRNA:   3'- gCAUGUCGCUGUU-CCaGCAGcugcuc -5'
12966 3' -52.5 NC_003387.1 + 9628 0.71 0.593019
Target:  5'- -cUGCAGCGACAAGGcUC-UCGACa-- -3'
miRNA:   3'- gcAUGUCGCUGUUCC-AGcAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 10778 0.66 0.868665
Target:  5'- --gGCGGCcuGCAucgucGGGUCGUCGGCGu- -3'
miRNA:   3'- gcaUGUCGc-UGU-----UCCAGCAGCUGCuc -5'
12966 3' -52.5 NC_003387.1 + 11305 0.69 0.714288
Target:  5'- gCGgcgACAGCGGCAAGc---UCGGCGAGa -3'
miRNA:   3'- -GCa--UGUCGCUGUUCcagcAGCUGCUC- -5'
12966 3' -52.5 NC_003387.1 + 11364 0.69 0.725043
Target:  5'- -cUGCAGaCGGCcGGGUCGUCGuuuGCGGc -3'
miRNA:   3'- gcAUGUC-GCUGuUCCAGCAGC---UGCUc -5'
12966 3' -52.5 NC_003387.1 + 11415 0.67 0.843446
Target:  5'- --cAUGGCGAUGAGGUUGcgcUCGuCGAGg -3'
miRNA:   3'- gcaUGUCGCUGUUCCAGC---AGCuGCUC- -5'
12966 3' -52.5 NC_003387.1 + 12030 0.67 0.843446
Target:  5'- -aUGCGGUguGGCAGGGcaUCGUCGACa-- -3'
miRNA:   3'- gcAUGUCG--CUGUUCC--AGCAGCUGcuc -5'
12966 3' -52.5 NC_003387.1 + 12906 0.67 0.822724
Target:  5'- uCG-ACGGCGugGGGGugccuagugguggcUCGUCGGCGc- -3'
miRNA:   3'- -GCaUGUCGCugUUCC--------------AGCAGCUGCuc -5'
12966 3' -52.5 NC_003387.1 + 13649 0.69 0.725043
Target:  5'- cCGUcgGCGGCGGCucGGUCGcCGAgGGc -3'
miRNA:   3'- -GCA--UGUCGCUGuuCCAGCaGCUgCUc -5'
12966 3' -52.5 NC_003387.1 + 14345 0.66 0.871862
Target:  5'- uCGUGCAGCaccaggauGAuguugucgagcuuguCGAGGgccUCGUCGACGAc -3'
miRNA:   3'- -GCAUGUCG--------CU---------------GUUCC---AGCAGCUGCUc -5'
12966 3' -52.5 NC_003387.1 + 15154 0.69 0.702363
Target:  5'- gCGUACAccuaccucgacgcGCGccGCGAGGUgaUCGACGAGg -3'
miRNA:   3'- -GCAUGU-------------CGC--UGUUCCAgcAGCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.