miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12966 5' -52.4 NC_003387.1 + 4832 0.66 0.845545
Target:  5'- aAGCUCGuGCGuaauCGUCAUCaUGGUGUc- -3'
miRNA:   3'- -UCGAGC-UGUu---GUAGUAGgACCACGac -5'
12966 5' -52.4 NC_003387.1 + 39103 0.66 0.836493
Target:  5'- cGCUCGuCuACuUCAUCgaGGUGCa- -3'
miRNA:   3'- uCGAGCuGuUGuAGUAGgaCCACGac -5'
12966 5' -52.4 NC_003387.1 + 2272 0.66 0.836493
Target:  5'- gGGgUCGGCucGACGUCGUCCUc--GCUGg -3'
miRNA:   3'- -UCgAGCUG--UUGUAGUAGGAccaCGAC- -5'
12966 5' -52.4 NC_003387.1 + 30323 0.66 0.827211
Target:  5'- gGGCU-GGCGGCGcuUUuUCCUGGUGCc- -3'
miRNA:   3'- -UCGAgCUGUUGU--AGuAGGACCACGac -5'
12966 5' -52.4 NC_003387.1 + 13311 0.66 0.827211
Target:  5'- cGGcCUCGACGGCAgCGaCCUGG-GCa- -3'
miRNA:   3'- -UC-GAGCUGUUGUaGUaGGACCaCGac -5'
12966 5' -52.4 NC_003387.1 + 20013 0.66 0.827211
Target:  5'- cGUUCGACcucACGUauUCC-GGUGCUGg -3'
miRNA:   3'- uCGAGCUGu--UGUAguAGGaCCACGAC- -5'
12966 5' -52.4 NC_003387.1 + 5860 0.66 0.817709
Target:  5'- gGGCgCcGCAAC--CGUCCUGGUGCg- -3'
miRNA:   3'- -UCGaGcUGUUGuaGUAGGACCACGac -5'
12966 5' -52.4 NC_003387.1 + 18568 0.66 0.79809
Target:  5'- aGGC-CGAgGGCGaCGcCCUGGUGCUc -3'
miRNA:   3'- -UCGaGCUgUUGUaGUaGGACCACGAc -5'
12966 5' -52.4 NC_003387.1 + 33253 0.67 0.787997
Target:  5'- uGCUCGACGACGUCcugCCcGGccUGCc- -3'
miRNA:   3'- uCGAGCUGUUGUAGua-GGaCC--ACGac -5'
12966 5' -52.4 NC_003387.1 + 31176 0.67 0.787997
Target:  5'- uGCaCGACGACGcgggCGUCgCcGGUGCUGa -3'
miRNA:   3'- uCGaGCUGUUGUa---GUAG-GaCCACGAC- -5'
12966 5' -52.4 NC_003387.1 + 48058 0.67 0.777729
Target:  5'- uGCUUGGCGGCGUCGgccgCUUGGcGCc- -3'
miRNA:   3'- uCGAGCUGUUGUAGUa---GGACCaCGac -5'
12966 5' -52.4 NC_003387.1 + 46604 0.67 0.777729
Target:  5'- cAGCacCGGCAgguGCGUgGUCUUGGUGCc- -3'
miRNA:   3'- -UCGa-GCUGU---UGUAgUAGGACCACGac -5'
12966 5' -52.4 NC_003387.1 + 38796 0.67 0.756722
Target:  5'- cAGcCUCGGCGGCGUCA---UGGUGCc- -3'
miRNA:   3'- -UC-GAGCUGUUGUAGUaggACCACGac -5'
12966 5' -52.4 NC_003387.1 + 48837 0.67 0.756722
Target:  5'- uGCUCGGCGcgacgcacgGCGUgCAcgcCCUGGUGCg- -3'
miRNA:   3'- uCGAGCUGU---------UGUA-GUa--GGACCACGac -5'
12966 5' -52.4 NC_003387.1 + 464 0.67 0.746007
Target:  5'- cGCUCGggcGCGGCGUugcCGUCagucucgaCUGGUGCUGu -3'
miRNA:   3'- uCGAGC---UGUUGUA---GUAG--------GACCACGAC- -5'
12966 5' -52.4 NC_003387.1 + 28812 0.68 0.735169
Target:  5'- cAGCUCGACGACGUuCAgccCCUcGGcGCg- -3'
miRNA:   3'- -UCGAGCUGUUGUA-GUa--GGA-CCaCGac -5'
12966 5' -52.4 NC_003387.1 + 14395 0.68 0.702041
Target:  5'- aGGaCUCGugGugGUCGUCgUGGU-CUGa -3'
miRNA:   3'- -UC-GAGCugUugUAGUAGgACCAcGAC- -5'
12966 5' -52.4 NC_003387.1 + 46987 0.68 0.702041
Target:  5'- gGGCgaCGACGACGagcgCGggccgCCUGGUGCUc -3'
miRNA:   3'- -UCGa-GCUGUUGUa---GUa----GGACCACGAc -5'
12966 5' -52.4 NC_003387.1 + 19710 0.69 0.656904
Target:  5'- cAGCUCGugAACGUgccgaaUAUCCcaaUGGUGCc- -3'
miRNA:   3'- -UCGAGCugUUGUA------GUAGG---ACCACGac -5'
12966 5' -52.4 NC_003387.1 + 12560 0.69 0.656904
Target:  5'- gGGCUCGACGACgAUCGggccgCCgacGGUGUc- -3'
miRNA:   3'- -UCGAGCUGUUG-UAGUa----GGa--CCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.