Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12968 | 3' | -57.9 | NC_003387.1 | + | 623 | 0.67 | 0.503154 |
Target: 5'- -gCAGGGCG-AGGGCAgcgucgccgccGCGGcagCGAc -3' miRNA: 3'- cgGUCCCGCuUCCCGUa----------CGCCaa-GCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 629 | 0.67 | 0.492943 |
Target: 5'- --aGGGGCcaguGGGGCAgGCGGU-CGAg -3' miRNA: 3'- cggUCCCGcu--UCCCGUaCGCCAaGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 1185 | 0.68 | 0.424418 |
Target: 5'- aGCgGcGGGCGcAGGGGCAaggGUGGccgUCGAc -3' miRNA: 3'- -CGgU-CCCGC-UUCCCGUa--CGCCa--AGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 1826 | 0.72 | 0.257115 |
Target: 5'- gGCCGauauGGCGAAGGGC-UGCGGccugUUUGAg -3' miRNA: 3'- -CGGUc---CCGCUUCCCGuACGCC----AAGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 3606 | 0.7 | 0.342815 |
Target: 5'- uUCAGGGCguccuggccgagcuGAGcGGGCGUGCGGguaucgccgUCGAc -3' miRNA: 3'- cGGUCCCG--------------CUU-CCCGUACGCCa--------AGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 3683 | 0.72 | 0.257115 |
Target: 5'- aCCgAGGcCGAGGGGC-UGCGGUUCa- -3' miRNA: 3'- cGG-UCCcGCUUCCCGuACGCCAAGcu -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 3834 | 0.69 | 0.405903 |
Target: 5'- cGUCAGGGCGgcGcGGUagGCGGcgcCGAc -3' miRNA: 3'- -CGGUCCCGCuuC-CCGuaCGCCaa-GCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 4029 | 0.75 | 0.151861 |
Target: 5'- cGCCAaGcGCG-AGGGCGUGCGGUgggugCGAu -3' miRNA: 3'- -CGGUcC-CGCuUCCCGUACGCCAa----GCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 5544 | 0.66 | 0.566117 |
Target: 5'- aGCCccgAGGGCGAccaccAGGGCcaccGCGGUg--- -3' miRNA: 3'- -CGG---UCCCGCU-----UCCCGua--CGCCAagcu -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 6047 | 0.72 | 0.257115 |
Target: 5'- cGgCAGGGCGccGGGCA---GGUUCGAg -3' miRNA: 3'- -CgGUCCCGCuuCCCGUacgCCAAGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 11272 | 0.68 | 0.433863 |
Target: 5'- aGUCAGGGCGGcgucAGGGCcgcGcCGGUgaccUCGGg -3' miRNA: 3'- -CGGUCCCGCU----UCCCGua-C-GCCA----AGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 14178 | 0.66 | 0.554389 |
Target: 5'- gGCCGcGGGCGuGAGGGCGUcgugaugGCGcg-CGAg -3' miRNA: 3'- -CGGU-CCCGC-UUCCCGUA-------CGCcaaGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 17154 | 0.67 | 0.492943 |
Target: 5'- gGCCAGGGCGccGaGGUAguccaucGCGGcgUCGu -3' miRNA: 3'- -CGGUCCCGCuuC-CCGUa------CGCCa-AGCu -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 19439 | 0.66 | 0.544846 |
Target: 5'- -aCAGGGCGuuAAGGcCGUGCGGgcgCGu -3' miRNA: 3'- cgGUCCCGC--UUCCcGUACGCCaa-GCu -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 19622 | 0.67 | 0.513455 |
Target: 5'- cGCC---GCGAAGGGCGcgacggGCGGcUCGAu -3' miRNA: 3'- -CGGuccCGCUUCCCGUa-----CGCCaAGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 22174 | 0.67 | 0.523842 |
Target: 5'- gGCCcaGGCG-GGGGCG-GCGGUaUCGGg -3' miRNA: 3'- -CGGucCCGCuUCCCGUaCGCCA-AGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 22657 | 0.66 | 0.566117 |
Target: 5'- cGCCccGGCGGccgucAGGGCGcgcucguggGCGGUgUCGAc -3' miRNA: 3'- -CGGucCCGCU-----UCCCGUa--------CGCCA-AGCU- -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 22711 | 0.66 | 0.542733 |
Target: 5'- gGCCuGGGCGAuaccgaccagucGGGCGUacucGCGGUcgcUCGc -3' miRNA: 3'- -CGGuCCCGCUu-----------CCCGUA----CGCCA---AGCu -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 23436 | 0.66 | 0.534307 |
Target: 5'- cGCCGGGGaacAGGGCGucgaUGCGGgUUGc -3' miRNA: 3'- -CGGUCCCgcuUCCCGU----ACGCCaAGCu -5' |
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12968 | 3' | -57.9 | NC_003387.1 | + | 24532 | 0.68 | 0.452138 |
Target: 5'- cGCCAccuuGGCGAGGGGCcgaGCgaaacugucgccgGGUUCGGg -3' miRNA: 3'- -CGGUc---CCGCUUCCCGua-CG-------------CCAAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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