miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12968 5' -54.4 NC_003387.1 + 2360 0.66 0.75216
Target:  5'- cGGCGucgagcgccacguacGCGGUCACGuugcCGCgg-GCGGCCUg -3'
miRNA:   3'- -CCGC---------------CGUUAGUGU----GCGacaUGUCGGA- -5'
12968 5' -54.4 NC_003387.1 + 37378 0.66 0.747945
Target:  5'- gGGCGGCGG-CGCccCGCUGU-CGGUa- -3'
miRNA:   3'- -CCGCCGUUaGUGu-GCGACAuGUCGga -5'
12968 5' -54.4 NC_003387.1 + 21952 0.66 0.737324
Target:  5'- cGGCGGCAggcGUCuGCgGCGCUGUucaacuACGGUg- -3'
miRNA:   3'- -CCGCCGU---UAG-UG-UGCGACA------UGUCGga -5'
12968 5' -54.4 NC_003387.1 + 15511 0.66 0.730898
Target:  5'- cGGCGGCGuuuAUgagcaccgccugcugCACGCGCUcgggGUGCcgGGCCg -3'
miRNA:   3'- -CCGCCGU---UA---------------GUGUGCGA----CAUG--UCGGa -5'
12968 5' -54.4 NC_003387.1 + 38061 0.66 0.730898
Target:  5'- cGGUGGCugagcgagcgccgcGUCACuguGCGCg--GCGGCCUg -3'
miRNA:   3'- -CCGCCGu-------------UAGUG---UGCGacaUGUCGGA- -5'
12968 5' -54.4 NC_003387.1 + 39464 0.66 0.726594
Target:  5'- uGGUGGCcuugcccuuGGUgCGCAgauCGCUGU-CGGCCUg -3'
miRNA:   3'- -CCGCCG---------UUA-GUGU---GCGACAuGUCGGA- -5'
12968 5' -54.4 NC_003387.1 + 25855 0.66 0.726594
Target:  5'- uGGCGGCAAggguggccugCAguUGCcGaGCGGCCUg -3'
miRNA:   3'- -CCGCCGUUa---------GUguGCGaCaUGUCGGA- -5'
12968 5' -54.4 NC_003387.1 + 42342 0.66 0.715767
Target:  5'- aGCGGCAca-ACugGCUGgugACgcaGGCCg -3'
miRNA:   3'- cCGCCGUuagUGugCGACa--UG---UCGGa -5'
12968 5' -54.4 NC_003387.1 + 25804 0.66 0.715767
Target:  5'- cGGCGGCcucGGUgGCGgccUGCUcgGCGGCCUg -3'
miRNA:   3'- -CCGCCG---UUAgUGU---GCGAcaUGUCGGA- -5'
12968 5' -54.4 NC_003387.1 + 31187 0.66 0.715767
Target:  5'- gGGCGGCAcGUCGaACGCgacGCGcGCCUg -3'
miRNA:   3'- -CCGCCGU-UAGUgUGCGacaUGU-CGGA- -5'
12968 5' -54.4 NC_003387.1 + 17156 0.66 0.704854
Target:  5'- cGGCGGCccgCGCugaGCUgGUGCGccGCCUg -3'
miRNA:   3'- -CCGCCGuuaGUGug-CGA-CAUGU--CGGA- -5'
12968 5' -54.4 NC_003387.1 + 49521 0.67 0.693868
Target:  5'- cGCGGCGAgcUUGCGCuGCUGguuGGCCUc -3'
miRNA:   3'- cCGCCGUU--AGUGUG-CGACaugUCGGA- -5'
12968 5' -54.4 NC_003387.1 + 45740 0.67 0.693868
Target:  5'- uGCGGCGccugcacaagugGUCcgaggGCGCGCUGUGgcGCCUg -3'
miRNA:   3'- cCGCCGU------------UAG-----UGUGCGACAUguCGGA- -5'
12968 5' -54.4 NC_003387.1 + 28931 0.67 0.693868
Target:  5'- cGGCGGCGAgguUCACGC-CUG-AguGUCg -3'
miRNA:   3'- -CCGCCGUU---AGUGUGcGACaUguCGGa -5'
12968 5' -54.4 NC_003387.1 + 34218 0.67 0.693868
Target:  5'- cGGCGGCccgagaGCAUGCUGca-GGCCc -3'
miRNA:   3'- -CCGCCGuuag--UGUGCGACaugUCGGa -5'
12968 5' -54.4 NC_003387.1 + 28564 0.67 0.68282
Target:  5'- aGGCGGCGAUCGC-CGUcg-ACGacGCCc -3'
miRNA:   3'- -CCGCCGUUAGUGuGCGacaUGU--CGGa -5'
12968 5' -54.4 NC_003387.1 + 31697 0.67 0.68282
Target:  5'- uGGCGaCGGUCAgcCAUGUUG-ACAGCCc -3'
miRNA:   3'- -CCGCcGUUAGU--GUGCGACaUGUCGGa -5'
12968 5' -54.4 NC_003387.1 + 37182 0.67 0.68282
Target:  5'- uGGCGGCccggCACcccgaGCGC-GUGCAGCa- -3'
miRNA:   3'- -CCGCCGuua-GUG-----UGCGaCAUGUCGga -5'
12968 5' -54.4 NC_003387.1 + 19660 0.67 0.68282
Target:  5'- cGCGGCGcuUgGCGCGCacccgGUGCGGCa- -3'
miRNA:   3'- cCGCCGUu-AgUGUGCGa----CAUGUCGga -5'
12968 5' -54.4 NC_003387.1 + 439 0.67 0.671723
Target:  5'- uGGCGGUuaagucuGUCGC-CGCcGcgGCGGCCg -3'
miRNA:   3'- -CCGCCGu------UAGUGuGCGaCa-UGUCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.