miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12969 3' -60.8 NC_003387.1 + 17091 0.66 0.459365
Target:  5'- --cGCCCCCaacacuaUCGACGACgagcuGGCGGGGg -3'
miRNA:   3'- guuCGGGGGcc-----GGCUGUUG-----CCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 43198 0.66 0.459365
Target:  5'- -cGGCUggCCgGGUacgCGGCGAuCGGCGAGGu -3'
miRNA:   3'- guUCGG--GGgCCG---GCUGUU-GCCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 164 0.66 0.459365
Target:  5'- uGGGCCUgCUGGCCGACGgcaagACGGUGc-- -3'
miRNA:   3'- gUUCGGG-GGCCGGCUGU-----UGCCGCucc -5'
12969 3' -60.8 NC_003387.1 + 30987 0.66 0.45366
Target:  5'- cCGAGCgCCUCGG-CGACGAuuuccacgaccagguCGGCGcGGg -3'
miRNA:   3'- -GUUCG-GGGGCCgGCUGUU---------------GCCGCuCC- -5'
12969 3' -60.8 NC_003387.1 + 27179 0.66 0.449879
Target:  5'- --uGCCCCuCGGCgUGugGugGcGCGAGc -3'
miRNA:   3'- guuCGGGG-GCCG-GCugUugC-CGCUCc -5'
12969 3' -60.8 NC_003387.1 + 25234 0.66 0.449879
Target:  5'- -cGGCaCCUCGGCCGACAuguggacCGGCu--- -3'
miRNA:   3'- guUCG-GGGGCCGGCUGUu------GCCGcucc -5'
12969 3' -60.8 NC_003387.1 + 44629 0.66 0.449879
Target:  5'- gCGAGCguguggCCCUGGCCGcgGCcuCGGCGAu- -3'
miRNA:   3'- -GUUCG------GGGGCCGGC--UGuuGCCGCUcc -5'
12969 3' -60.8 NC_003387.1 + 37801 0.66 0.440502
Target:  5'- -cAGCaCCCgCGGUCGcaGCAGCGcGCGAucGGg -3'
miRNA:   3'- guUCG-GGG-GCCGGC--UGUUGC-CGCU--CC- -5'
12969 3' -60.8 NC_003387.1 + 9327 0.66 0.440502
Target:  5'- -cGGCCCCCgaGGUCGACGuCGuCGAGc -3'
miRNA:   3'- guUCGGGGG--CCGGCUGUuGCcGCUCc -5'
12969 3' -60.8 NC_003387.1 + 9019 0.66 0.440502
Target:  5'- uCGAGCaCCUGGCgGGCGccguCGGCGAu- -3'
miRNA:   3'- -GUUCGgGGGCCGgCUGUu---GCCGCUcc -5'
12969 3' -60.8 NC_003387.1 + 52574 0.66 0.440502
Target:  5'- gCAGGCCCa--GCuCGGCGGCGcggaucGCGAGGg -3'
miRNA:   3'- -GUUCGGGggcCG-GCUGUUGC------CGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 26516 0.66 0.431237
Target:  5'- gGAGUgCgaGGCCGACGACGaCGAGc -3'
miRNA:   3'- gUUCGgGggCCGGCUGUUGCcGCUCc -5'
12969 3' -60.8 NC_003387.1 + 611 0.66 0.431237
Target:  5'- --cGCUCa-GGCCGAgCAG-GGCGAGGg -3'
miRNA:   3'- guuCGGGggCCGGCU-GUUgCCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 20781 0.66 0.431237
Target:  5'- -cGGCCCUCGGCUuuGGUAACGGCaagcGGGu -3'
miRNA:   3'- guUCGGGGGCCGG--CUGUUGCCGc---UCC- -5'
12969 3' -60.8 NC_003387.1 + 46090 0.66 0.430317
Target:  5'- aCGAGCCCaagaCGGCCGccgACAuguuccggcugcuGCGGUGGcucGGg -3'
miRNA:   3'- -GUUCGGGg---GCCGGC---UGU-------------UGCCGCU---CC- -5'
12969 3' -60.8 NC_003387.1 + 37434 0.66 0.430317
Target:  5'- aGAGCCCCaagccGCCGACGguugccaugcugGCGGCGcugcgccgccaaaAGGu -3'
miRNA:   3'- gUUCGGGGgc---CGGCUGU------------UGCCGC-------------UCC- -5'
12969 3' -60.8 NC_003387.1 + 45082 0.66 0.422087
Target:  5'- --cGUCCUgGGCCGGuguuCGGCGGCcAGGu -3'
miRNA:   3'- guuCGGGGgCCGGCU----GUUGCCGcUCC- -5'
12969 3' -60.8 NC_003387.1 + 4364 0.66 0.422087
Target:  5'- --uGCCCuuGGCgCGcuCGGCGGCcAGGu -3'
miRNA:   3'- guuCGGGggCCG-GCu-GUUGCCGcUCC- -5'
12969 3' -60.8 NC_003387.1 + 6436 0.66 0.422087
Target:  5'- cCAGGCCgUCgaGGUCGugGGCGGCGucGc -3'
miRNA:   3'- -GUUCGGgGG--CCGGCugUUGCCGCucC- -5'
12969 3' -60.8 NC_003387.1 + 12220 0.66 0.422087
Target:  5'- cCGGGCCaCCGGCgGucgccagcGCAGCGGCGcucGGc -3'
miRNA:   3'- -GUUCGGgGGCCGgC--------UGUUGCCGCu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.