miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12969 3' -60.8 NC_003387.1 + 164 0.66 0.459365
Target:  5'- uGGGCCUgCUGGCCGACGgcaagACGGUGc-- -3'
miRNA:   3'- gUUCGGG-GGCCGGCUGU-----UGCCGCucc -5'
12969 3' -60.8 NC_003387.1 + 455 0.67 0.386689
Target:  5'- --cGCCgCCgCGGCgGcCGACGGCGAccGGc -3'
miRNA:   3'- guuCGG-GG-GCCGgCuGUUGCCGCU--CC- -5'
12969 3' -60.8 NC_003387.1 + 611 0.66 0.431237
Target:  5'- --cGCUCa-GGCCGAgCAG-GGCGAGGg -3'
miRNA:   3'- guuCGGGggCCGGCU-GUUgCCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 1252 0.7 0.265761
Target:  5'- --cGCCaCCGaaGCCGACGGacccCGGCGAGGu -3'
miRNA:   3'- guuCGGgGGC--CGGCUGUU----GCCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 1747 0.76 0.101353
Target:  5'- --cGCCCCCGGCCG-CuauCGGCucGGGGg -3'
miRNA:   3'- guuCGGGGGCCGGCuGuu-GCCG--CUCC- -5'
12969 3' -60.8 NC_003387.1 + 1811 0.67 0.404143
Target:  5'- gAAGCUgaCCGGCgCGGCcgauAUGGCGaAGGg -3'
miRNA:   3'- gUUCGGg-GGCCG-GCUGu---UGCCGC-UCC- -5'
12969 3' -60.8 NC_003387.1 + 2128 0.71 0.212287
Target:  5'- --cGCCCCagCGGCCGACGugGaguucccCGAGGa -3'
miRNA:   3'- guuCGGGG--GCCGGCUGUugCc------GCUCC- -5'
12969 3' -60.8 NC_003387.1 + 3141 0.72 0.177334
Target:  5'- cCAGGCCaccgCCCGGCagcgGGCGcaccuCGGCGAGGc -3'
miRNA:   3'- -GUUCGG----GGGCCGg---CUGUu----GCCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 3933 0.68 0.337392
Target:  5'- --cGCCgCCGcGgCGAuCAGCGGCGAGc -3'
miRNA:   3'- guuCGGgGGC-CgGCU-GUUGCCGCUCc -5'
12969 3' -60.8 NC_003387.1 + 4364 0.66 0.422087
Target:  5'- --uGCCCuuGGCgCGcuCGGCGGCcAGGu -3'
miRNA:   3'- guuCGGGggCCG-GCu-GUUGCCGcUCC- -5'
12969 3' -60.8 NC_003387.1 + 4621 0.66 0.412158
Target:  5'- gCGAGCCaCCgCGGgCG-CAGCGGCagcgccacccgucGAGGc -3'
miRNA:   3'- -GUUCGG-GG-GCCgGCuGUUGCCG-------------CUCC- -5'
12969 3' -60.8 NC_003387.1 + 4794 0.67 0.369738
Target:  5'- gCAGGCCCgcggcgaCGGCC-ACAACGGCa--- -3'
miRNA:   3'- -GUUCGGGg------GCCGGcUGUUGCCGcucc -5'
12969 3' -60.8 NC_003387.1 + 5085 0.67 0.368904
Target:  5'- gAGGCCCgCUagucgcgGGCC-AUGugGGCGAGGu -3'
miRNA:   3'- gUUCGGG-GG-------CCGGcUGUugCCGCUCC- -5'
12969 3' -60.8 NC_003387.1 + 5508 0.68 0.329634
Target:  5'- gAGGCCCaCCacaauGCCGACAcCGGCGGc- -3'
miRNA:   3'- gUUCGGG-GGc----CGGCUGUuGCCGCUcc -5'
12969 3' -60.8 NC_003387.1 + 5749 0.67 0.386689
Target:  5'- aCGAGCugaacgCCUCGGCCGACGAgcugaucgccUGGCGuGa -3'
miRNA:   3'- -GUUCG------GGGGCCGGCUGUU----------GCCGCuCc -5'
12969 3' -60.8 NC_003387.1 + 6150 0.67 0.395354
Target:  5'- --uGCCCgaGGCCGAUuggguCGGUGAGu -3'
miRNA:   3'- guuCGGGggCCGGCUGuu---GCCGCUCc -5'
12969 3' -60.8 NC_003387.1 + 6436 0.66 0.422087
Target:  5'- cCAGGCCgUCgaGGUCGugGGCGGCGucGc -3'
miRNA:   3'- -GUUCGGgGG--CCGGCugUUGCCGCucC- -5'
12969 3' -60.8 NC_003387.1 + 6751 0.68 0.353303
Target:  5'- cCAGGCCaCCC--UCGGCAcCGGCGAGa -3'
miRNA:   3'- -GUUCGG-GGGccGGCUGUuGCCGCUCc -5'
12969 3' -60.8 NC_003387.1 + 7146 0.69 0.279035
Target:  5'- gAGGCCCggcuccucggCCGuGCCGACGAgcUGGCGGcGGa -3'
miRNA:   3'- gUUCGGG----------GGC-CGGCUGUU--GCCGCU-CC- -5'
12969 3' -60.8 NC_003387.1 + 7739 0.66 0.413055
Target:  5'- -cAGCaccgCCUCGG-CGGCAGCGGCGAu- -3'
miRNA:   3'- guUCG----GGGGCCgGCUGUUGCCGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.