miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12969 5' -55.4 NC_003387.1 + 17245 0.66 0.667494
Target:  5'- -aCGCCGUGGCGuGUCGAAacgUCGAu-- -3'
miRNA:   3'- uaGUGGCGCCGC-CGGUUUa--AGCUcuu -5'
12969 5' -55.4 NC_003387.1 + 41591 0.66 0.667493
Target:  5'- uUgAUCGCGGCGGUCAGcuugUCGAa-- -3'
miRNA:   3'- uAgUGGCGCCGCCGGUUua--AGCUcuu -5'
12969 5' -55.4 NC_003387.1 + 43796 0.66 0.667493
Target:  5'- -gCAUCGCGGUGGCCucGgaCGuGAGc -3'
miRNA:   3'- uaGUGGCGCCGCCGGuuUaaGCuCUU- -5'
12969 5' -55.4 NC_003387.1 + 48529 0.66 0.656281
Target:  5'- --gACaCGCGGUGGCCGAAgcaccgcgcCGAGGu -3'
miRNA:   3'- uagUG-GCGCCGCCGGUUUaa-------GCUCUu -5'
12969 5' -55.4 NC_003387.1 + 27537 0.66 0.656281
Target:  5'- --uGCCGCGGCGGCgGcgc-CGGGGc -3'
miRNA:   3'- uagUGGCGCCGCCGgUuuaaGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 26936 0.66 0.656281
Target:  5'- --gGCCGcCGaGCGGCCGAGaaugUCGAGc- -3'
miRNA:   3'- uagUGGC-GC-CGCCGGUUUa---AGCUCuu -5'
12969 5' -55.4 NC_003387.1 + 2902 0.66 0.645045
Target:  5'- cUCGCCgggcGCGGCaGGCCGcGggCGAGGc -3'
miRNA:   3'- uAGUGG----CGCCG-CCGGUuUaaGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 42870 0.66 0.645045
Target:  5'- -aCACCGCGGUGcCCGGcggCGAGGc -3'
miRNA:   3'- uaGUGGCGCCGCcGGUUuaaGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 9369 0.66 0.633797
Target:  5'- --aGCCgGUGGCGGCCGAGgcgaccccCGAGGc -3'
miRNA:   3'- uagUGG-CGCCGCCGGUUUaa------GCUCUu -5'
12969 5' -55.4 NC_003387.1 + 46316 0.66 0.633796
Target:  5'- aGUCACCGCGGCcGGaauCAGcgcCGGGGAa -3'
miRNA:   3'- -UAGUGGCGCCG-CCg--GUUuaaGCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 41100 0.66 0.633796
Target:  5'- -aCugCGCGGCGGUCGcggccUUCGuGAu -3'
miRNA:   3'- uaGugGCGCCGCCGGUuu---AAGCuCUu -5'
12969 5' -55.4 NC_003387.1 + 15093 0.66 0.633796
Target:  5'- uUCACUGCGGCGGCgAuuaccUCGGc-- -3'
miRNA:   3'- uAGUGGCGCCGCCGgUuua--AGCUcuu -5'
12969 5' -55.4 NC_003387.1 + 45116 0.66 0.622547
Target:  5'- -aCGCCGCGGUGuaCGAGgugacgcauUUCGAGGc -3'
miRNA:   3'- uaGUGGCGCCGCcgGUUU---------AAGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 47108 0.66 0.622547
Target:  5'- -cCGCCGCaacGCGGCCuGAUUcaagCGAGGAg -3'
miRNA:   3'- uaGUGGCGc--CGCCGGuUUAA----GCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 45979 0.66 0.622546
Target:  5'- --uGCCGagGGUGGCCugg-UCGAGGAa -3'
miRNA:   3'- uagUGGCg-CCGCCGGuuuaAGCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 48727 0.66 0.611306
Target:  5'- gAUCGCCGCcaCGGCCGccucAAUccUCGGGAAc -3'
miRNA:   3'- -UAGUGGCGccGCCGGU----UUA--AGCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 12455 0.66 0.611306
Target:  5'- uUCGCUgGCGGCGGCCuggccgCGGGc- -3'
miRNA:   3'- uAGUGG-CGCCGCCGGuuuaa-GCUCuu -5'
12969 5' -55.4 NC_003387.1 + 24884 0.66 0.611305
Target:  5'- -gCGCCGCGGCuGUCGAAcUCGAc-- -3'
miRNA:   3'- uaGUGGCGCCGcCGGUUUaAGCUcuu -5'
12969 5' -55.4 NC_003387.1 + 30256 0.67 0.600084
Target:  5'- -aCGCCGCGGUcGUCGAGUaccgCGAGGc -3'
miRNA:   3'- uaGUGGCGCCGcCGGUUUAa---GCUCUu -5'
12969 5' -55.4 NC_003387.1 + 49429 0.67 0.600083
Target:  5'- -gCGCCcgaguCGGCGGCCGug-UCGGGGu -3'
miRNA:   3'- uaGUGGc----GCCGCCGGUuuaAGCUCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.