miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12969 5' -55.4 NC_003387.1 + 49778 0.67 0.598963
Target:  5'- cGUUACCuGCGGUGGCUGcuggcgcAGUUCGAcGAGa -3'
miRNA:   3'- -UAGUGG-CGCCGCCGGU-------UUAAGCU-CUU- -5'
12969 5' -55.4 NC_003387.1 + 29675 0.67 0.58889
Target:  5'- cUCGCCGaCGucgacgucgacGUGGCCGAggUCGAGGc -3'
miRNA:   3'- uAGUGGC-GC-----------CGCCGGUUuaAGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 46354 0.67 0.577734
Target:  5'- cGUCGcCCGCGGCcgaGGCCAAGcgCGAc-- -3'
miRNA:   3'- -UAGU-GGCGCCG---CCGGUUUaaGCUcuu -5'
12969 5' -55.4 NC_003387.1 + 51861 0.67 0.566626
Target:  5'- --uGCCGCGGUGGCCccggugaucgcGAAggccgucgCGAGAAg -3'
miRNA:   3'- uagUGGCGCCGCCGG-----------UUUaa------GCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 19034 0.67 0.566625
Target:  5'- -aCACCGcCGGUcGCCGAG-UCGAGGu -3'
miRNA:   3'- uaGUGGC-GCCGcCGGUUUaAGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 35377 0.67 0.565518
Target:  5'- gAUCGCCGUcgccuGGCaugcguucacgcuGGCCGAGUucgUCGAGAu -3'
miRNA:   3'- -UAGUGGCG-----CCG-------------CCGGUUUA---AGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 13894 0.67 0.555573
Target:  5'- --aGCUGCGGCGGCUcg--UCGAGc- -3'
miRNA:   3'- uagUGGCGCCGCCGGuuuaAGCUCuu -5'
12969 5' -55.4 NC_003387.1 + 2221 0.67 0.555572
Target:  5'- cUCGCCGgucaGGCGGCCAGcgUCa---- -3'
miRNA:   3'- uAGUGGCg---CCGCCGGUUuaAGcucuu -5'
12969 5' -55.4 NC_003387.1 + 43698 0.68 0.544583
Target:  5'- gAUCGCCGaCGGCGcccGCCAGGUgcUCGAc-- -3'
miRNA:   3'- -UAGUGGC-GCCGC---CGGUUUA--AGCUcuu -5'
12969 5' -55.4 NC_003387.1 + 23328 0.68 0.544583
Target:  5'- -gCGCC-CGGCGGgCGAGaUCGAGGu -3'
miRNA:   3'- uaGUGGcGCCGCCgGUUUaAGCUCUu -5'
12969 5' -55.4 NC_003387.1 + 39033 0.68 0.544583
Target:  5'- -aCACCGUgguGGCGGCCGG--UCGAcGAc -3'
miRNA:   3'- uaGUGGCG---CCGCCGGUUuaAGCU-CUu -5'
12969 5' -55.4 NC_003387.1 + 42146 0.68 0.533665
Target:  5'- cGUgGCgGCGGUGGCCcgcuGUcgaUCGAGGAg -3'
miRNA:   3'- -UAgUGgCGCCGCCGGuu--UA---AGCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 27290 0.68 0.533665
Target:  5'- -aCGCCGCacuGGCGGCCc---UUGAGAGc -3'
miRNA:   3'- uaGUGGCG---CCGCCGGuuuaAGCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 17022 0.68 0.527152
Target:  5'- aAUCaaACCGCGGCGGCUGccgcccucgccgggcGucgUCGAGGAc -3'
miRNA:   3'- -UAG--UGGCGCCGCCGGU---------------Uua-AGCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 18523 0.68 0.522826
Target:  5'- -cCGCCGCGGUGGCacgCAGgcGUUCGcGAAc -3'
miRNA:   3'- uaGUGGCGCCGCCG---GUU--UAAGCuCUU- -5'
12969 5' -55.4 NC_003387.1 + 4853 0.68 0.512073
Target:  5'- -aCGCCGagauGGCGGCCGAgcaGUUCuGGAAg -3'
miRNA:   3'- uaGUGGCg---CCGCCGGUU---UAAGcUCUU- -5'
12969 5' -55.4 NC_003387.1 + 6316 0.68 0.501412
Target:  5'- gGUCGCCGagcugGGCGGCCAGGcgaUCGgcaAGAAg -3'
miRNA:   3'- -UAGUGGCg----CCGCCGGUUUa--AGC---UCUU- -5'
12969 5' -55.4 NC_003387.1 + 41710 0.68 0.501412
Target:  5'- -gCGCCGacgaaGGCGGCCGGGgcacggcCGAGGAc -3'
miRNA:   3'- uaGUGGCg----CCGCCGGUUUaa-----GCUCUU- -5'
12969 5' -55.4 NC_003387.1 + 21660 0.68 0.49085
Target:  5'- -cCGCgGCGGCGGCCGAgcacguGUUCGccGAc -3'
miRNA:   3'- uaGUGgCGCCGCCGGUU------UAAGCu-CUu -5'
12969 5' -55.4 NC_003387.1 + 48799 0.68 0.49085
Target:  5'- gAUCGCCGCGGCGGCgGccaUCGu--- -3'
miRNA:   3'- -UAGUGGCGCCGCCGgUuuaAGCucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.