Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 15962 | 0.66 | 0.844557 |
|
Target: 5'- uGCUCUGAauggggguaaUAACCGGCcagCAgugcugacCGGUCAGg -3' miRNA: 3'- -UGAGACU----------GUUGGCCGua-GU--------GUUAGUC- -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 6350 | 0.66 | 0.834982 |
|
Target: 5'- -gUC-GACAgacucACCGGCAUCGCg--CAGg -3' miRNA: 3'- ugAGaCUGU-----UGGCCGUAGUGuuaGUC- -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 18442 | 0.66 | 0.815084 |
|
Target: 5'- cGCUC-GAUAGCugcaaaaauguCGGCGUCAUAuuugGUCAGg -3' miRNA: 3'- -UGAGaCUGUUG-----------GCCGUAGUGU----UAGUC- -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 19849 | 0.66 | 0.804785 |
|
Target: 5'- uUUCUGACccGACUGGCugacCGCAAUgGGg -3' miRNA: 3'- uGAGACUG--UUGGCCGua--GUGUUAgUC- -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 6538 | 0.66 | 0.804785 |
|
Target: 5'- cGCUCaaucuccuUGcGCAcACCGGCAUUGCGGUCGa -3' miRNA: 3'- -UGAG--------AC-UGU-UGGCCGUAGUGUUAGUc -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 7784 | 0.67 | 0.761578 |
|
Target: 5'- uAUUCUGGugaguguuaaUGACCGGCAUCACuuUCc- -3' miRNA: 3'- -UGAGACU----------GUUGGCCGUAGUGuuAGuc -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 6471 | 0.77 | 0.237671 |
|
Target: 5'- cCUCUG-CAuucauACCGGCAUCACGcaggGUCAGg -3' miRNA: 3'- uGAGACuGU-----UGGCCGUAGUGU----UAGUC- -5' |
|||||||
| 1297 | 3' | -50 | NC_001317.1 | + | 28738 | 1.08 | 0.001723 |
|
Target: 5'- cACUCUGACAACCGGCAUCACAAUCAGc -3' miRNA: 3'- -UGAGACUGUUGGCCGUAGUGUUAGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home