miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1297 5' -56.5 NC_001317.1 + 21326 0.68 0.320407
Target:  5'- gCCUUGCACCcGAUGGaacuuaugUCGGUGGc--- -3'
miRNA:   3'- -GGGACGUGGaCUACC--------GGCCACCauuu -5'
1297 5' -56.5 NC_001317.1 + 16739 0.73 0.157294
Target:  5'- gCCUGCGCCUGcgcgcgGGUCGGauUGGUGGu -3'
miRNA:   3'- gGGACGUGGACua----CCGGCC--ACCAUUu -5'
1297 5' -56.5 NC_001317.1 + 28775 1.08 0.000359
Target:  5'- gCCCUGCACCUGAUGGCCGGUGGUAAAa -3'
miRNA:   3'- -GGGACGUGGACUACCGGCCACCAUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.