miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12970 3' -46.4 NC_003387.1 + 49661 0.66 0.994695
Target:  5'- uGUAC-GGCUCGACcgaGGCGG--GCGGGa -3'
miRNA:   3'- uCAUGuUCGAGUUG---UUGCUagUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 13170 0.66 0.994695
Target:  5'- aGGU-CAGGCUCGcguGCcAUGAUCAgcCGGGc -3'
miRNA:   3'- -UCAuGUUCGAGU---UGuUGCUAGU--GUCC- -5'
12970 3' -46.4 NC_003387.1 + 4014 0.66 0.994695
Target:  5'- --cACGGuGCUCGACAACGccaagCGCgAGGg -3'
miRNA:   3'- ucaUGUU-CGAGUUGUUGCua---GUG-UCC- -5'
12970 3' -46.4 NC_003387.1 + 37779 0.66 0.993745
Target:  5'- cGUGCucaagcgcgccuGGGCgCAGCAcccGCGGUCGCAGc -3'
miRNA:   3'- uCAUG------------UUCGaGUUGU---UGCUAGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 27380 0.66 0.993112
Target:  5'- cGGUGCGGGCguUCAcggcguucucuguguACGACGcgCGCuGGc -3'
miRNA:   3'- -UCAUGUUCG--AGU---------------UGUUGCuaGUGuCC- -5'
12970 3' -46.4 NC_003387.1 + 43304 0.66 0.992663
Target:  5'- cGGUGCuGGg-CGACuacGCGAUCACAGc -3'
miRNA:   3'- -UCAUGuUCgaGUUGu--UGCUAGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 16521 0.66 0.992663
Target:  5'- -uUACGccgaGGCgccaCAGCAGCGcgUACAGGu -3'
miRNA:   3'- ucAUGU----UCGa---GUUGUUGCuaGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 16374 0.66 0.992311
Target:  5'- -aUGCAGGCccgucguuucgcagUCGACGACGAccaauugccuugUCACAGu -3'
miRNA:   3'- ucAUGUUCG--------------AGUUGUUGCU------------AGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 29861 0.66 0.992311
Target:  5'- gAGUGCAGGCUgAucagugcgccuugcGCGcCGAUCGCGuuGGc -3'
miRNA:   3'- -UCAUGUUCGAgU--------------UGUuGCUAGUGU--CC- -5'
12970 3' -46.4 NC_003387.1 + 39960 0.66 0.991437
Target:  5'- gAGUACGAGCgcgaggucgCGcACGACGAUuaccCGCAGu -3'
miRNA:   3'- -UCAUGUUCGa--------GU-UGUUGCUA----GUGUCc -5'
12970 3' -46.4 NC_003387.1 + 26517 0.66 0.991437
Target:  5'- gAGUGCgAGGCcgaCGACGACGAgccguCAGGc -3'
miRNA:   3'- -UCAUG-UUCGa--GUUGUUGCUagu--GUCC- -5'
12970 3' -46.4 NC_003387.1 + 52333 0.66 0.991437
Target:  5'- gGGUGCGAGUgcacUCGACGagAUGggCGCGGa -3'
miRNA:   3'- -UCAUGUUCG----AGUUGU--UGCuaGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 15872 0.66 0.991437
Target:  5'- -cUGCu-GCUUGAgGGCGGUCACAGc -3'
miRNA:   3'- ucAUGuuCGAGUUgUUGCUAGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 33155 0.66 0.991437
Target:  5'- --aGCAGGCUCGcCAGcCGAcUCgACAGGu -3'
miRNA:   3'- ucaUGUUCGAGUuGUU-GCU-AG-UGUCC- -5'
12970 3' -46.4 NC_003387.1 + 38181 0.67 0.990054
Target:  5'- cAGUACAAGCgCAACGGCccggccgccGAguaccgcaCGCAGGc -3'
miRNA:   3'- -UCAUGUUCGaGUUGUUG---------CUa-------GUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 51493 0.67 0.990054
Target:  5'- cGUACcGGC-CAGCAG-GAUCAgCGGGu -3'
miRNA:   3'- uCAUGuUCGaGUUGUUgCUAGU-GUCC- -5'
12970 3' -46.4 NC_003387.1 + 838 0.67 0.990054
Target:  5'- --gACGAGCuucUCGGCGacggccuucGCGAUCAcCGGGg -3'
miRNA:   3'- ucaUGUUCG---AGUUGU---------UGCUAGU-GUCC- -5'
12970 3' -46.4 NC_003387.1 + 18877 0.67 0.988502
Target:  5'- cGU-CAAGCUCGGgGuCGAUCAggcuCGGGa -3'
miRNA:   3'- uCAuGUUCGAGUUgUuGCUAGU----GUCC- -5'
12970 3' -46.4 NC_003387.1 + 38792 0.67 0.988502
Target:  5'- uGUACAGcCUCGGCGGCG-UCAUGGu -3'
miRNA:   3'- uCAUGUUcGAGUUGUUGCuAGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 28591 0.67 0.986769
Target:  5'- ---uCAAGCUCAACAccgcCGcgUACGGGc -3'
miRNA:   3'- ucauGUUCGAGUUGUu---GCuaGUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.