miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12970 3' -46.4 NC_003387.1 + 39509 1.14 0.004208
Target:  5'- gAGUACAAGCUCAACAACGAUCACAGGg -3'
miRNA:   3'- -UCAUGUUCGAGUUGUUGCUAGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 38792 0.67 0.988502
Target:  5'- uGUACAGcCUCGGCGGCG-UCAUGGu -3'
miRNA:   3'- uCAUGUUcGAGUUGUUGCuAGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 26517 0.66 0.991437
Target:  5'- gAGUGCgAGGCcgaCGACGACGAgccguCAGGc -3'
miRNA:   3'- -UCAUG-UUCGa--GUUGUUGCUagu--GUCC- -5'
12970 3' -46.4 NC_003387.1 + 4014 0.66 0.994695
Target:  5'- --cACGGuGCUCGACAACGccaagCGCgAGGg -3'
miRNA:   3'- ucaUGUU-CGAGUUGUUGCua---GUG-UCC- -5'
12970 3' -46.4 NC_003387.1 + 38367 0.71 0.898013
Target:  5'- --gACAAGCUCGACAAC-AUCAUccuGGu -3'
miRNA:   3'- ucaUGUUCGAGUUGUUGcUAGUGu--CC- -5'
12970 3' -46.4 NC_003387.1 + 16567 0.71 0.905298
Target:  5'- aGGUGCAGGUgcgCAACGGCGG-CAacgcCGGGa -3'
miRNA:   3'- -UCAUGUUCGa--GUUGUUGCUaGU----GUCC- -5'
12970 3' -46.4 NC_003387.1 + 31696 0.7 0.939243
Target:  5'- uGGU-CAGGCguagCAACGACcaacguguuagcgcaGGUCGCAGGc -3'
miRNA:   3'- -UCAuGUUCGa---GUUGUUG---------------CUAGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 43108 0.7 0.947544
Target:  5'- gGGUACGAGCgCGACGGCGcggcgcCGCGGu -3'
miRNA:   3'- -UCAUGUUCGaGUUGUUGCua----GUGUCc -5'
12970 3' -46.4 NC_003387.1 + 2685 0.68 0.975237
Target:  5'- uGUACGAGCUUGACcucGGCGAgguugugcucggcgaCGCGGGc -3'
miRNA:   3'- uCAUGUUCGAGUUG---UUGCUa--------------GUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 28591 0.67 0.986769
Target:  5'- ---uCAAGCUCAACAccgcCGcgUACGGGc -3'
miRNA:   3'- ucauGUUCGAGUUGUu---GCuaGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 3971 0.68 0.980353
Target:  5'- -cUGCAAgGCUCGGCGACc--CGCGGGu -3'
miRNA:   3'- ucAUGUU-CGAGUUGUUGcuaGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 22545 0.69 0.964903
Target:  5'- gAGgGCuGGCUCGACG-CGGUggCGCAGGc -3'
miRNA:   3'- -UCaUGuUCGAGUUGUuGCUA--GUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 52600 0.77 0.646639
Target:  5'- --aGCGAGCUCAGCAaacacgcccugaccuGCGGUUauGCAGGg -3'
miRNA:   3'- ucaUGUUCGAGUUGU---------------UGCUAG--UGUCC- -5'
12970 3' -46.4 NC_003387.1 + 47371 0.67 0.982707
Target:  5'- uGUugAcAGCUCAACAcCGAcaccgcaagCGCGGGg -3'
miRNA:   3'- uCAugU-UCGAGUUGUuGCUa--------GUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 46983 0.74 0.767666
Target:  5'- -aUGCGGGCgaCGACGACGAgCGCGGGc -3'
miRNA:   3'- ucAUGUUCGa-GUUGUUGCUaGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 49076 0.69 0.961004
Target:  5'- --gGCAGGCUCG-CGGCG--CGCAGGc -3'
miRNA:   3'- ucaUGUUCGAGUuGUUGCuaGUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 4588 0.67 0.984841
Target:  5'- gAGgccgACAAGCUCGA--ACGcgCGCAGc -3'
miRNA:   3'- -UCa---UGUUCGAGUUguUGCuaGUGUCc -5'
12970 3' -46.4 NC_003387.1 + 38181 0.67 0.990054
Target:  5'- cAGUACAAGCgCAACGGCccggccgccGAguaccgcaCGCAGGc -3'
miRNA:   3'- -UCAUGUUCGaGUUGUUG---------CUa-------GUGUCC- -5'
12970 3' -46.4 NC_003387.1 + 10773 0.74 0.788998
Target:  5'- cGGUACGAGcCUCGACGAaaugggcuCGAUCuucaacaagguGCAGGg -3'
miRNA:   3'- -UCAUGUUC-GAGUUGUU--------GCUAG-----------UGUCC- -5'
12970 3' -46.4 NC_003387.1 + 13241 0.7 0.937043
Target:  5'- --aGCAGGC-CGACAGCGAUCugcgcaccaAGGg -3'
miRNA:   3'- ucaUGUUCGaGUUGUUGCUAGug-------UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.