miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12970 5' -58.7 NC_003387.1 + 52582 0.66 0.540904
Target:  5'- aGCUCGGCggcgcgGAUCGcgagGGCgaccgcaucgAgGCGGGCg -3'
miRNA:   3'- gCGGGCCGa-----CUAGUa---CCG----------UgCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 50690 0.66 0.540904
Target:  5'- aGCUCGGCgacgGcggccGUCGgcGGCAC-CGAGCa -3'
miRNA:   3'- gCGGGCCGa---C-----UAGUa-CCGUGcGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 28761 0.66 0.540904
Target:  5'- cCGCCCGGCg---C-UGcGCACGUGcugcAGCa -3'
miRNA:   3'- -GCGGGCCGacuaGuAC-CGUGCGC----UCG- -5'
12970 5' -58.7 NC_003387.1 + 15810 0.66 0.540904
Target:  5'- gCGCUgGGCUGAcgcgcacagcgUCAccgaGGCgaugcugaaagACGCGGGCu -3'
miRNA:   3'- -GCGGgCCGACU-----------AGUa---CCG-----------UGCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 37267 0.66 0.539856
Target:  5'- gGCCCGcGUggcGGUCAaggcgccUGGCGCGCucgucGGCg -3'
miRNA:   3'- gCGGGC-CGa--CUAGU-------ACCGUGCGc----UCG- -5'
12970 5' -58.7 NC_003387.1 + 41812 0.66 0.530457
Target:  5'- aCGCCUGGCaGAUCAUcGaCGaGCuGAGCa -3'
miRNA:   3'- -GCGGGCCGaCUAGUAcC-GUgCG-CUCG- -5'
12970 5' -58.7 NC_003387.1 + 20052 0.66 0.530457
Target:  5'- uGCgCGGCgagGuUCAgcucGGCguGCGUGAGCg -3'
miRNA:   3'- gCGgGCCGa--CuAGUa---CCG--UGCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 10092 0.66 0.530457
Target:  5'- aCGgUCGGCaaguUCAUGGCaaugcGCGCuGAGCg -3'
miRNA:   3'- -GCgGGCCGacu-AGUACCG-----UGCG-CUCG- -5'
12970 5' -58.7 NC_003387.1 + 2335 0.66 0.530457
Target:  5'- aGCUCGGCgguGUCGaGGCcgccgucgGCGuCGAGCg -3'
miRNA:   3'- gCGGGCCGac-UAGUaCCG--------UGC-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 46244 0.66 0.520085
Target:  5'- gGCCCGGUUGGUCGcgccgacaaUGucggacucGUugGCGAcGCc -3'
miRNA:   3'- gCGGGCCGACUAGU---------AC--------CGugCGCU-CG- -5'
12970 5' -58.7 NC_003387.1 + 23373 0.66 0.520085
Target:  5'- uGgCCGaGCUGAUUcgGGuCGCcGaCGAGCu -3'
miRNA:   3'- gCgGGC-CGACUAGuaCC-GUG-C-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 31246 0.66 0.520085
Target:  5'- aGCCCGGCccGAcCGgcgcgGGCuGCGCcAGCg -3'
miRNA:   3'- gCGGGCCGa-CUaGUa----CCG-UGCGcUCG- -5'
12970 5' -58.7 NC_003387.1 + 33788 0.66 0.509793
Target:  5'- gGCCCGGCUGGUgccgacacccgaUGaGGCGCa-GGGCa -3'
miRNA:   3'- gCGGGCCGACUA------------GUaCCGUGcgCUCG- -5'
12970 5' -58.7 NC_003387.1 + 18095 0.66 0.509793
Target:  5'- uGCCCgaGGCUGcgCA-GGUAgGCG-GCc -3'
miRNA:   3'- gCGGG--CCGACuaGUaCCGUgCGCuCG- -5'
12970 5' -58.7 NC_003387.1 + 24824 0.66 0.509793
Target:  5'- aGCUCGGCguacUCGggcGGCugGcCGGGCu -3'
miRNA:   3'- gCGGGCCGacu-AGUa--CCGugC-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 30007 0.66 0.509793
Target:  5'- aCGCCCGaCUGGUCGguaucgcccaGGC-CGCcAGCg -3'
miRNA:   3'- -GCGGGCcGACUAGUa---------CCGuGCGcUCG- -5'
12970 5' -58.7 NC_003387.1 + 36001 0.66 0.506722
Target:  5'- gGCacgaucgaCGGCgaGGUCGUGGUGCGCcgcaagcggaucaaGAGCa -3'
miRNA:   3'- gCGg-------GCCGa-CUAGUACCGUGCG--------------CUCG- -5'
12970 5' -58.7 NC_003387.1 + 29721 0.66 0.499587
Target:  5'- gCGCCCaGGCcGAcgacGGCagcuACGCGGGCg -3'
miRNA:   3'- -GCGGG-CCGaCUaguaCCG----UGCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 21492 0.66 0.499587
Target:  5'- gGCCgGGCUGGuUCGUGuCGCugcaCGAGCc -3'
miRNA:   3'- gCGGgCCGACU-AGUACcGUGc---GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 22992 0.66 0.499587
Target:  5'- uCGCCCGcguaGCUGccgucGUCGgccugGGCGCcGcCGAGCg -3'
miRNA:   3'- -GCGGGC----CGAC-----UAGUa----CCGUG-C-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.