miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12970 5' -58.7 NC_003387.1 + 324 0.69 0.371616
Target:  5'- aGCCCGGCgacacgcacgccaaGAUCcgcGUGcGCgcggucgaucuGCGCGAGCg -3'
miRNA:   3'- gCGGGCCGa-------------CUAG---UAC-CG-----------UGCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 1598 0.7 0.319613
Target:  5'- gCGCCCuGGCaUGuUCGgccgGGCGCGUguGGGCa -3'
miRNA:   3'- -GCGGG-CCG-ACuAGUa---CCGUGCG--CUCG- -5'
12970 5' -58.7 NC_003387.1 + 1611 0.67 0.430974
Target:  5'- gGCCUGGCgauuUCGgucGGCGCGUGcuGGCu -3'
miRNA:   3'- gCGGGCCGacu-AGUa--CCGUGCGC--UCG- -5'
12970 5' -58.7 NC_003387.1 + 1761 0.75 0.147647
Target:  5'- aGCCCGGCggcgGcgC-UGGCGCcCGAGCu -3'
miRNA:   3'- gCGGGCCGa---CuaGuACCGUGcGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 2335 0.66 0.530457
Target:  5'- aGCUCGGCgguGUCGaGGCcgccgucgGCGuCGAGCg -3'
miRNA:   3'- gCGGGCCGac-UAGUaCCG--------UGC-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 2421 0.68 0.389008
Target:  5'- cCGCCUGGgaGAUguggcagcgcaaccgCAUGGaCGCGCGccaGGCc -3'
miRNA:   3'- -GCGGGCCgaCUA---------------GUACC-GUGCGC---UCG- -5'
12970 5' -58.7 NC_003387.1 + 2903 0.69 0.335258
Target:  5'- uCGCCgGGCgcggCA-GGC-CGCGGGCg -3'
miRNA:   3'- -GCGGgCCGacuaGUaCCGuGCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 2919 0.68 0.4033
Target:  5'- uCGaCCGGCUGAUCGUGu--CGCGguucGGCg -3'
miRNA:   3'- -GCgGGCCGACUAGUACcguGCGC----UCG- -5'
12970 5' -58.7 NC_003387.1 + 3752 0.67 0.440444
Target:  5'- uCGUCCaaGCUGAcgacgcaGUGGUACGcCGAGCa -3'
miRNA:   3'- -GCGGGc-CGACUag-----UACCGUGC-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 3935 0.72 0.219666
Target:  5'- cCGCCgCGGC-GAUCAgcggcgagcUGGCuGCGcCGAGCa -3'
miRNA:   3'- -GCGG-GCCGaCUAGU---------ACCG-UGC-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 3977 0.69 0.351456
Target:  5'- gGCUCGGCgacccgcgGGUCAUGGacucguCGCGGcGCa -3'
miRNA:   3'- gCGGGCCGa-------CUAGUACCgu----GCGCU-CG- -5'
12970 5' -58.7 NC_003387.1 + 4338 0.7 0.28927
Target:  5'- gCGCCCGGCccgcuugcgaaugUGGUUgcccuUGGCGCGCucGGCg -3'
miRNA:   3'- -GCGGGCCG-------------ACUAGu----ACCGUGCGc-UCG- -5'
12970 5' -58.7 NC_003387.1 + 5200 0.7 0.304521
Target:  5'- gGCCCGGCUG----UGGCGCcuCGGGUa -3'
miRNA:   3'- gCGGGCCGACuaguACCGUGc-GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 6698 0.67 0.479456
Target:  5'- aCGCUCGGC--GUCuu-GCAcCGCGGGCa -3'
miRNA:   3'- -GCGGGCCGacUAGuacCGU-GCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 7359 0.67 0.430974
Target:  5'- cCGCaCCGGCaugguugcGGUCGaaaugGGCA-GCGAGCg -3'
miRNA:   3'- -GCG-GGCCGa-------CUAGUa----CCGUgCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 7818 0.73 0.182904
Target:  5'- aCGCCUGGCggccgaGGUCGcccGGCGCGCaGGCg -3'
miRNA:   3'- -GCGGGCCGa-----CUAGUa--CCGUGCGcUCG- -5'
12970 5' -58.7 NC_003387.1 + 8027 0.71 0.26255
Target:  5'- gGCCC-GCUGG---UGGcCGCGCGAGCc -3'
miRNA:   3'- gCGGGcCGACUaguACC-GUGCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 8286 0.67 0.46954
Target:  5'- gCGCCuCGuGCgcGUCGgcgGGCAgcauCGCGAGCa -3'
miRNA:   3'- -GCGG-GC-CGacUAGUa--CCGU----GCGCUCG- -5'
12970 5' -58.7 NC_003387.1 + 9070 0.71 0.249643
Target:  5'- gGCCUGGCUGAccUCAagcUGGUGCacaaCGAGCc -3'
miRNA:   3'- gCGGGCCGACU--AGU---ACCGUGc---GCUCG- -5'
12970 5' -58.7 NC_003387.1 + 10092 0.66 0.530457
Target:  5'- aCGgUCGGCaaguUCAUGGCaaugcGCGCuGAGCg -3'
miRNA:   3'- -GCgGGCCGacu-AGUACCG-----UGCG-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.