miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12971 3' -58.4 NC_003387.1 + 21603 0.66 0.523834
Target:  5'- -cGGGCGGCGCccaccuGGCGCucGgGGguGCg -3'
miRNA:   3'- cuUCCGCUGCG------UCGCGcaCgUCguCG- -5'
12971 3' -58.4 NC_003387.1 + 25182 0.66 0.523834
Target:  5'- --cGGUGGCccCGGCGCcgccgccGCGGCAGCg -3'
miRNA:   3'- cuuCCGCUGc-GUCGCGca-----CGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 17157 0.66 0.517544
Target:  5'- cAGGGCGccgagguaguccauCGCGGCGuCGUGCuccuGGCGGg -3'
miRNA:   3'- cUUCCGCu-------------GCGUCGC-GCACG----UCGUCg -5'
12971 3' -58.4 NC_003387.1 + 44933 0.66 0.514411
Target:  5'- uGGGGCGACGaGGCGCucgcgaaggcucagGCcGCGGCu -3'
miRNA:   3'- cUUCCGCUGCgUCGCGca------------CGuCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 52662 0.66 0.513367
Target:  5'- ---cGCGGCGCcgaucgAGCGCGUuuguGCAGguCAGCg -3'
miRNA:   3'- cuucCGCUGCG------UCGCGCA----CGUC--GUCG- -5'
12971 3' -58.4 NC_003387.1 + 12024 0.66 0.513367
Target:  5'- --cGGCGcAUGCGGUGUG-GCAG-GGCa -3'
miRNA:   3'- cuuCCGC-UGCGUCGCGCaCGUCgUCG- -5'
12971 3' -58.4 NC_003387.1 + 50992 0.66 0.513367
Target:  5'- cGggGGCGuuuuCGUuuGC-UGUGCAcGCGGCa -3'
miRNA:   3'- -CuuCCGCu---GCGu-CGcGCACGU-CGUCG- -5'
12971 3' -58.4 NC_003387.1 + 42357 0.66 0.513367
Target:  5'- --uGGUGACGCAgGC-CGUGCGGaucauguGCg -3'
miRNA:   3'- cuuCCGCUGCGU-CGcGCACGUCgu-----CG- -5'
12971 3' -58.4 NC_003387.1 + 23093 0.66 0.513367
Target:  5'- ---cGCGcCGUcGCGCGUGCGGU-GCa -3'
miRNA:   3'- cuucCGCuGCGuCGCGCACGUCGuCG- -5'
12971 3' -58.4 NC_003387.1 + 17355 0.66 0.513367
Target:  5'- -cAGGCGACG--GCGaucagGUGCGGCgAGCc -3'
miRNA:   3'- cuUCCGCUGCguCGCg----CACGUCG-UCG- -5'
12971 3' -58.4 NC_003387.1 + 9691 0.66 0.513367
Target:  5'- cGAGGCGugG-GGC-CGUGaCGGCGGg -3'
miRNA:   3'- cUUCCGCugCgUCGcGCAC-GUCGUCg -5'
12971 3' -58.4 NC_003387.1 + 51279 0.66 0.510244
Target:  5'- cGAGGaCGACGaccccgagcccugcCAGCuCGUcgGCGGCGGCg -3'
miRNA:   3'- cUUCC-GCUGC--------------GUCGcGCA--CGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 1727 0.66 0.507129
Target:  5'- -cGGGCGGCGCaucccGGUGCugaucgacagcaugaGcccgGCGGCGGCg -3'
miRNA:   3'- cuUCCGCUGCG-----UCGCG---------------Ca---CGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 19440 0.66 0.502988
Target:  5'- cAGGGCGuuaaggcCGUgcgGGCGCGUGuCAGUgugGGCg -3'
miRNA:   3'- cUUCCGCu------GCG---UCGCGCAC-GUCG---UCG- -5'
12971 3' -58.4 NC_003387.1 + 470 0.66 0.502988
Target:  5'- cGAcGGCGAC-CGGCGCGaGCuGCucgucGCg -3'
miRNA:   3'- -CUuCCGCUGcGUCGCGCaCGuCGu----CG- -5'
12971 3' -58.4 NC_003387.1 + 52083 0.66 0.502988
Target:  5'- -cGGGCGuCGCuGcCGCG-GCGGCGacGCu -3'
miRNA:   3'- cuUCCGCuGCGuC-GCGCaCGUCGU--CG- -5'
12971 3' -58.4 NC_003387.1 + 36917 0.66 0.502988
Target:  5'- cGgcGGCGACGCGGCacccCGcUGguGCuGUu -3'
miRNA:   3'- -CuuCCGCUGCGUCGc---GC-ACguCGuCG- -5'
12971 3' -58.4 NC_003387.1 + 21829 0.66 0.501954
Target:  5'- uGGGaGCGcaaGCGCAGCGUGUGgacaccggcgcacCAGguGCc -3'
miRNA:   3'- cUUC-CGC---UGCGUCGCGCAC-------------GUCguCG- -5'
12971 3' -58.4 NC_003387.1 + 4038 0.66 0.4927
Target:  5'- cGAGGGCG-UGCGGUGgGUGCgauacgccucGGUcacGGCg -3'
miRNA:   3'- -CUUCCGCuGCGUCGCgCACG----------UCG---UCG- -5'
12971 3' -58.4 NC_003387.1 + 21547 0.66 0.4927
Target:  5'- --cGGCGACGCccGCGUcgucGUGCAGaccguGGCc -3'
miRNA:   3'- cuuCCGCUGCGu-CGCG----CACGUCg----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.