miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12971 3' -58.4 NC_003387.1 + 39689 1.12 0.000241
Target:  5'- cGAAGGCGACGCAGCGCGUGCAGCAGCg -3'
miRNA:   3'- -CUUCCGCUGCGUCGCGCACGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 25299 0.81 0.052725
Target:  5'- cAGGGCGACGuCGGCGCGgUGguGcCAGCg -3'
miRNA:   3'- cUUCCGCUGC-GUCGCGC-ACguC-GUCG- -5'
12971 3' -58.4 NC_003387.1 + 5032 0.79 0.064526
Target:  5'- cGAGGGCGGCGCuGCGCGagucggUGCucAGCGGUa -3'
miRNA:   3'- -CUUCCGCUGCGuCGCGC------ACG--UCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 21598 0.77 0.090909
Target:  5'- cGAGGcCGACGCGGCGC-UGCuGguGCa -3'
miRNA:   3'- cUUCC-GCUGCGUCGCGcACGuCguCG- -5'
12971 3' -58.4 NC_003387.1 + 44479 0.76 0.10768
Target:  5'- --uGGCcccgcacaGCAGCGCGUGCAGCAGa -3'
miRNA:   3'- cuuCCGcug-----CGUCGCGCACGUCGUCg -5'
12971 3' -58.4 NC_003387.1 + 37182 0.76 0.110744
Target:  5'- --uGGCGGCccgGCaccccgAGCGCGUGCAGCAGg -3'
miRNA:   3'- cuuCCGCUG---CG------UCGCGCACGUCGUCg -5'
12971 3' -58.4 NC_003387.1 + 2716 0.76 0.122462
Target:  5'- --cGGCGACGCGG-GCGgcgggcaggccacGCAGCAGCc -3'
miRNA:   3'- cuuCCGCUGCGUCgCGCa------------CGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 15100 0.75 0.137963
Target:  5'- cGgcGGCGAUuaccucgGCAGUGCgGUGCGGguGCa -3'
miRNA:   3'- -CuuCCGCUG-------CGUCGCG-CACGUCguCG- -5'
12971 3' -58.4 NC_003387.1 + 2944 0.74 0.149005
Target:  5'- --cGGCGccaaccCGCAGCGCGUGaucagcggguggacCGGCAGCa -3'
miRNA:   3'- cuuCCGCu-----GCGUCGCGCAC--------------GUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 624 0.74 0.154401
Target:  5'- cAGGGCGAgGgCAGCGuCGccgccGCGGCAGCg -3'
miRNA:   3'- cUUCCGCUgC-GUCGC-GCa----CGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 32279 0.74 0.154401
Target:  5'- cAAGGCGugGgGGCGCGaggagcaccgGCGGCuGCa -3'
miRNA:   3'- cUUCCGCugCgUCGCGCa---------CGUCGuCG- -5'
12971 3' -58.4 NC_003387.1 + 41972 0.74 0.154401
Target:  5'- --cGGCGAuCGCGGC-CGUGuCAGCGGUc -3'
miRNA:   3'- cuuCCGCU-GCGUCGcGCAC-GUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 15264 0.74 0.158672
Target:  5'- --uGGCGGCGCAGCGCcgcCAGCAugGCa -3'
miRNA:   3'- cuuCCGCUGCGUCGCGcacGUCGU--CG- -5'
12971 3' -58.4 NC_003387.1 + 7817 0.73 0.172129
Target:  5'- --cGGCGACGCGauacggauauGCGCGcccgGCGGCuGCg -3'
miRNA:   3'- cuuCCGCUGCGU----------CGCGCa---CGUCGuCG- -5'
12971 3' -58.4 NC_003387.1 + 6384 0.73 0.181658
Target:  5'- -cGGGCGACGCcuUGCGUG-GGCGGCc -3'
miRNA:   3'- cuUCCGCUGCGucGCGCACgUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 40331 0.73 0.181658
Target:  5'- aAGGGCGAaaUGCGGaaaGcCGUGCAGCAGg -3'
miRNA:   3'- cUUCCGCU--GCGUCg--C-GCACGUCGUCg -5'
12971 3' -58.4 NC_003387.1 + 6855 0.73 0.186596
Target:  5'- --cGGC--CGCGGCGCGcagccGCAGCAGCu -3'
miRNA:   3'- cuuCCGcuGCGUCGCGCa----CGUCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 22077 0.73 0.186596
Target:  5'- --uGGCGACggcgGUAGCGCGUGgGGCAcGUa -3'
miRNA:   3'- cuuCCGCUG----CGUCGCGCACgUCGU-CG- -5'
12971 3' -58.4 NC_003387.1 + 8264 0.73 0.191651
Target:  5'- -cGGGCGugcagcgccucGCGCAGCGCcucGUGCgcgucggcgGGCAGCa -3'
miRNA:   3'- cuUCCGC-----------UGCGUCGCG---CACG---------UCGUCG- -5'
12971 3' -58.4 NC_003387.1 + 28454 0.73 0.196827
Target:  5'- cGAGGCGGCgGCAGauCGCG-GC-GCAGCa -3'
miRNA:   3'- cUUCCGCUG-CGUC--GCGCaCGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.