miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12971 5' -53.5 NC_003387.1 + 20040 0.66 0.781024
Target:  5'- gUGUcGACGACGUGcGCGgCGAGGUUc- -3'
miRNA:   3'- gACGaCUGCUGCGU-CGC-GCUCUAAua -5'
12971 5' -53.5 NC_003387.1 + 24651 0.66 0.781024
Target:  5'- cCUGCUGcGCGAgguCGcCAGCGcCGAGggUGa -3'
miRNA:   3'- -GACGAC-UGCU---GC-GUCGC-GCUCuaAUa -5'
12971 5' -53.5 NC_003387.1 + 46121 0.66 0.770706
Target:  5'- gCUGCUG-CgGugGCucgGGCGUGAGGUg-- -3'
miRNA:   3'- -GACGACuG-CugCG---UCGCGCUCUAaua -5'
12971 5' -53.5 NC_003387.1 + 467 0.66 0.770706
Target:  5'- -gGCcGACGGCGacCGGCGCGAGc---- -3'
miRNA:   3'- gaCGaCUGCUGC--GUCGCGCUCuaaua -5'
12971 5' -53.5 NC_003387.1 + 27174 0.66 0.770706
Target:  5'- gCUGCUGccccuCGGCGUgugguGGCGCGAGc---- -3'
miRNA:   3'- -GACGACu----GCUGCG-----UCGCGCUCuaaua -5'
12971 5' -53.5 NC_003387.1 + 43117 0.66 0.760237
Target:  5'- -cGC-GACGGCGCGGCGcCGcGGUg-- -3'
miRNA:   3'- gaCGaCUGCUGCGUCGC-GCuCUAaua -5'
12971 5' -53.5 NC_003387.1 + 13141 0.66 0.749629
Target:  5'- -cGCUGGUG-CGCAGCGCGAa----- -3'
miRNA:   3'- gaCGACUGCuGCGUCGCGCUcuaaua -5'
12971 5' -53.5 NC_003387.1 + 26031 0.66 0.738894
Target:  5'- -gGCgucGACGA-GCAGCGCGAGc---- -3'
miRNA:   3'- gaCGa--CUGCUgCGUCGCGCUCuaaua -5'
12971 5' -53.5 NC_003387.1 + 23711 0.66 0.738894
Target:  5'- uUGCUGACuucggacgGGCGCAGCGCa------- -3'
miRNA:   3'- gACGACUG--------CUGCGUCGCGcucuaaua -5'
12971 5' -53.5 NC_003387.1 + 25296 0.67 0.728046
Target:  5'- -aGCcagGGCGACGuCGGCGCGGuGGUg-- -3'
miRNA:   3'- gaCGa--CUGCUGC-GUCGCGCU-CUAaua -5'
12971 5' -53.5 NC_003387.1 + 31428 0.67 0.704949
Target:  5'- aCUGCUcgacggccucgacGACGACGCGGUGCGc------ -3'
miRNA:   3'- -GACGA-------------CUGCUGCGUCGCGCucuaaua -5'
12971 5' -53.5 NC_003387.1 + 4018 0.68 0.672531
Target:  5'- gUGCUcGACaACGCcaAGCGCGAGGg--- -3'
miRNA:   3'- gACGA-CUGcUGCG--UCGCGCUCUaaua -5'
12971 5' -53.5 NC_003387.1 + 29651 0.68 0.661259
Target:  5'- gUGCUGucggccuugcgcACGGCGUAGUGCGuGAUc-- -3'
miRNA:   3'- gACGAC------------UGCUGCGUCGCGCuCUAaua -5'
12971 5' -53.5 NC_003387.1 + 5026 0.68 0.649958
Target:  5'- -gGCUcacgagGGCGGCGCuGCGCGAGucgGUg -3'
miRNA:   3'- gaCGA------CUGCUGCGuCGCGCUCuaaUA- -5'
12971 5' -53.5 NC_003387.1 + 38927 0.68 0.615996
Target:  5'- -cGCUGugGaucugcgaGCGCAGCGCGAc----- -3'
miRNA:   3'- gaCGACugC--------UGCGUCGCGCUcuaaua -5'
12971 5' -53.5 NC_003387.1 + 49059 0.69 0.60582
Target:  5'- gCUGCUGGCGcucaccgggcaggcuCGCGGCGCGcAGGc--- -3'
miRNA:   3'- -GACGACUGCu--------------GCGUCGCGC-UCUaaua -5'
12971 5' -53.5 NC_003387.1 + 52650 0.69 0.593411
Target:  5'- uCUGCcuccugguggugUGGCGACGUAGC-CGGGAUg-- -3'
miRNA:   3'- -GACG------------ACUGCUGCGUCGcGCUCUAaua -5'
12971 5' -53.5 NC_003387.1 + 26700 0.69 0.592285
Target:  5'- gCUGCUcgucGACGccgucguGCGCGGCGCGAGc---- -3'
miRNA:   3'- -GACGA----CUGC-------UGCGUCGCGCUCuaaua -5'
12971 5' -53.5 NC_003387.1 + 11296 0.69 0.582166
Target:  5'- uUGCgaccGGCGGCGaCAGCggcaagcucgGCGAGAUUGUc -3'
miRNA:   3'- gACGa---CUGCUGC-GUCG----------CGCUCUAAUA- -5'
12971 5' -53.5 NC_003387.1 + 37460 0.7 0.526771
Target:  5'- aUGCUGGCGGCGCuGCGCcgccaaaAGGUg-- -3'
miRNA:   3'- gACGACUGCUGCGuCGCGc------UCUAaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.