Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12971 | 5' | -53.5 | NC_003387.1 | + | 5026 | 0.68 | 0.649958 |
Target: 5'- -gGCUcacgagGGCGGCGCuGCGCGAGucgGUg -3' miRNA: 3'- gaCGA------CUGCUGCGuCGCGCUCuaaUA- -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 24456 | 0.75 | 0.285411 |
Target: 5'- -aGCcGACGA-GCAGCGCGAGGUg-- -3' miRNA: 3'- gaCGaCUGCUgCGUCGCGCUCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 36366 | 0.75 | 0.285411 |
Target: 5'- cCUGCaUGACGGCGCAGCGauuuugGAGGUc-- -3' miRNA: 3'- -GACG-ACUGCUGCGUCGCg-----CUCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 3759 | 0.71 | 0.494483 |
Target: 5'- -aGCUGACGACGCAGUGguacgcCGAGc---- -3' miRNA: 3'- gaCGACUGCUGCGUCGC------GCUCuaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 39687 | 0.71 | 0.494483 |
Target: 5'- -cGCgaaGGCGACGCAGCGCGuGc---- -3' miRNA: 3'- gaCGa--CUGCUGCGUCGCGCuCuaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 18183 | 0.7 | 0.515915 |
Target: 5'- -cGCUGACGAU-CGGCuGCGAGGUg-- -3' miRNA: 3'- gaCGACUGCUGcGUCG-CGCUCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 37460 | 0.7 | 0.526771 |
Target: 5'- aUGCUGGCGGCGCuGCGCcgccaaaAGGUg-- -3' miRNA: 3'- gACGACUGCUGCGuCGCGc------UCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 11296 | 0.69 | 0.582166 |
Target: 5'- uUGCgaccGGCGGCGaCAGCggcaagcucgGCGAGAUUGUc -3' miRNA: 3'- gACGa---CUGCUGC-GUCG----------CGCUCUAAUA- -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 26700 | 0.69 | 0.592285 |
Target: 5'- gCUGCUcgucGACGccgucguGCGCGGCGCGAGc---- -3' miRNA: 3'- -GACGA----CUGC-------UGCGUCGCGCUCuaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 39726 | 1.05 | 0.002222 |
Target: 5'- gCUGCUGACGACGCAGCGCGAGAUUAUc -3' miRNA: 3'- -GACGACUGCUGCGUCGCGCUCUAAUA- -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 49059 | 0.69 | 0.60582 |
Target: 5'- gCUGCUGGCGcucaccgggcaggcuCGCGGCGCGcAGGc--- -3' miRNA: 3'- -GACGACUGCu--------------GCGUCGCGC-UCUaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 24651 | 0.66 | 0.781024 |
Target: 5'- cCUGCUGcGCGAgguCGcCAGCGcCGAGggUGa -3' miRNA: 3'- -GACGAC-UGCU---GC-GUCGC-GCUCuaAUa -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 4018 | 0.68 | 0.672531 |
Target: 5'- gUGCUcGACaACGCcaAGCGCGAGGg--- -3' miRNA: 3'- gACGA-CUGcUGCG--UCGCGCUCUaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 43117 | 0.66 | 0.760237 |
Target: 5'- -cGC-GACGGCGCGGCGcCGcGGUg-- -3' miRNA: 3'- gaCGaCUGCUGCGUCGC-GCuCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 467 | 0.66 | 0.770706 |
Target: 5'- -gGCcGACGGCGacCGGCGCGAGc---- -3' miRNA: 3'- gaCGaCUGCUGC--GUCGCGCUCuaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 27174 | 0.66 | 0.770706 |
Target: 5'- gCUGCUGccccuCGGCGUgugguGGCGCGAGc---- -3' miRNA: 3'- -GACGACu----GCUGCG-----UCGCGCUCuaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 46121 | 0.66 | 0.770706 |
Target: 5'- gCUGCUG-CgGugGCucgGGCGUGAGGUg-- -3' miRNA: 3'- -GACGACuG-CugCG---UCGCGCUCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 31428 | 0.67 | 0.704949 |
Target: 5'- aCUGCUcgacggccucgacGACGACGCGGUGCGc------ -3' miRNA: 3'- -GACGA-------------CUGCUGCGUCGCGCucuaaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 29651 | 0.68 | 0.661259 |
Target: 5'- gUGCUGucggccuugcgcACGGCGUAGUGCGuGAUc-- -3' miRNA: 3'- gACGAC------------UGCUGCGUCGCGCuCUAaua -5' |
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12971 | 5' | -53.5 | NC_003387.1 | + | 26031 | 0.66 | 0.738894 |
Target: 5'- -gGCgucGACGA-GCAGCGCGAGc---- -3' miRNA: 3'- gaCGa--CUGCUgCGUCGCGCUCuaaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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