miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12972 3' -54.1 NC_003387.1 + 44929 0.66 0.731603
Target:  5'- --uGCAGCucgGCCUgCACCucggGCAGCUuGCg -3'
miRNA:   3'- uauCGUCGca-CGGA-GUGG----UGUUGA-CG- -5'
12972 3' -54.1 NC_003387.1 + 12844 0.66 0.731603
Target:  5'- -gGGCGGCGUGga-CACCGCAcCgGCg -3'
miRNA:   3'- uaUCGUCGCACggaGUGGUGUuGaCG- -5'
12972 3' -54.1 NC_003387.1 + 52492 0.66 0.731603
Target:  5'- --uGgGGCG-G-CUCACCGCAAgUGCa -3'
miRNA:   3'- uauCgUCGCaCgGAGUGGUGUUgACG- -5'
12972 3' -54.1 NC_003387.1 + 5204 0.66 0.720653
Target:  5'- -cGGCuGUGgcGCCUCggguACCGCAcgauGCUGCu -3'
miRNA:   3'- uaUCGuCGCa-CGGAG----UGGUGU----UGACG- -5'
12972 3' -54.1 NC_003387.1 + 19603 0.66 0.720653
Target:  5'- uGUGGCAGuCGUuCCUugaCGCCGCGAaggGCg -3'
miRNA:   3'- -UAUCGUC-GCAcGGA---GUGGUGUUga-CG- -5'
12972 3' -54.1 NC_003387.1 + 46199 0.66 0.709609
Target:  5'- -cAGCAGgGUGUCaggugccCACCcggccgacGCAACUGCc -3'
miRNA:   3'- uaUCGUCgCACGGa------GUGG--------UGUUGACG- -5'
12972 3' -54.1 NC_003387.1 + 42062 0.66 0.698484
Target:  5'- --cGCGGCGUGuacgaCCUgGCgCGCGuGCUGCg -3'
miRNA:   3'- uauCGUCGCAC-----GGAgUG-GUGU-UGACG- -5'
12972 3' -54.1 NC_003387.1 + 34779 0.66 0.698484
Target:  5'- -cAGCcGCGggGCCUCGCUugAGCa-- -3'
miRNA:   3'- uaUCGuCGCa-CGGAGUGGugUUGacg -5'
12972 3' -54.1 NC_003387.1 + 7713 0.66 0.688413
Target:  5'- -cAGCAGCucgaugcgguaGUGCCUCACagcaccgccucggcgGCAGCgGCg -3'
miRNA:   3'- uaUCGUCG-----------CACGGAGUGg--------------UGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 25372 0.66 0.687291
Target:  5'- -gAGCGGCGagGUCgagggGCUGCGGCUGCu -3'
miRNA:   3'- uaUCGUCGCa-CGGag---UGGUGUUGACG- -5'
12972 3' -54.1 NC_003387.1 + 20223 0.67 0.676042
Target:  5'- --cGCAGCGgcaGUCgucgCACCACGGC-GCc -3'
miRNA:   3'- uauCGUCGCa--CGGa---GUGGUGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 22625 0.67 0.676042
Target:  5'- uUGGCGGCccugGCCgccCGCCgACGACUGa -3'
miRNA:   3'- uAUCGUCGca--CGGa--GUGG-UGUUGACg -5'
12972 3' -54.1 NC_003387.1 + 17630 0.67 0.664748
Target:  5'- -gAGCcggaauGCGUGCCaggcCACCGCGAUuaggUGCu -3'
miRNA:   3'- uaUCGu-----CGCACGGa---GUGGUGUUG----ACG- -5'
12972 3' -54.1 NC_003387.1 + 13014 0.67 0.664748
Target:  5'- -cAGCAGCccgaucUGCCgcugCugCACGcGCUGCg -3'
miRNA:   3'- uaUCGUCGc-----ACGGa---GugGUGU-UGACG- -5'
12972 3' -54.1 NC_003387.1 + 48497 0.67 0.663617
Target:  5'- --cGCGGCGgGCCUgCAgguaauccugcucCCACuGCUGCa -3'
miRNA:   3'- uauCGUCGCaCGGA-GU-------------GGUGuUGACG- -5'
12972 3' -54.1 NC_003387.1 + 29108 0.67 0.653422
Target:  5'- --uGCcGuUGUGCCcCACCACAGCUcGCc -3'
miRNA:   3'- uauCGuC-GCACGGaGUGGUGUUGA-CG- -5'
12972 3' -54.1 NC_003387.1 + 45192 0.67 0.653422
Target:  5'- -cGGCAGCaGUGCCgcucucguUCACCcuCGGCcGCa -3'
miRNA:   3'- uaUCGUCG-CACGG--------AGUGGu-GUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 24724 0.67 0.64321
Target:  5'- -aAGC-GCGUGCUcgccgaaaucgagggCGCCGCAACgGCa -3'
miRNA:   3'- uaUCGuCGCACGGa--------------GUGGUGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 11585 0.67 0.642075
Target:  5'- --cGCAGCG-GCCgUCGgCGC-GCUGCc -3'
miRNA:   3'- uauCGUCGCaCGG-AGUgGUGuUGACG- -5'
12972 3' -54.1 NC_003387.1 + 4165 0.67 0.642075
Target:  5'- cUGGCGGU--GCCagACCGCAACgGCu -3'
miRNA:   3'- uAUCGUCGcaCGGagUGGUGUUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.