miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12972 3' -54.1 NC_003387.1 + 10748 0.67 0.630718
Target:  5'- --cGCGGCG-GCCUCcGCgCGCAGCUccucGCu -3'
miRNA:   3'- uauCGUCGCaCGGAG-UG-GUGUUGA----CG- -5'
12972 3' -54.1 NC_003387.1 + 10854 0.67 0.630718
Target:  5'- --uGCAGgcCGUGCCcgcUCAUCACGACcGCc -3'
miRNA:   3'- uauCGUC--GCACGG---AGUGGUGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 8403 0.67 0.630718
Target:  5'- --uGCGGUGUcgggGCCUCGCCGguGC-GCg -3'
miRNA:   3'- uauCGUCGCA----CGGAGUGGUguUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 30882 0.68 0.619363
Target:  5'- -cGGUAGCGggGCCaUCGCCGgGAaaGCg -3'
miRNA:   3'- uaUCGUCGCa-CGG-AGUGGUgUUgaCG- -5'
12972 3' -54.1 NC_003387.1 + 39556 0.68 0.619363
Target:  5'- cAUGGCAcGCGaGCCUgACCuCGACgGCc -3'
miRNA:   3'- -UAUCGU-CGCaCGGAgUGGuGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 44623 0.68 0.596698
Target:  5'- cGUGGCgcgAGCGUGuggcCCUgGCCGCGGCcucgGCg -3'
miRNA:   3'- -UAUCG---UCGCAC----GGAgUGGUGUUGa---CG- -5'
12972 3' -54.1 NC_003387.1 + 46592 0.68 0.585408
Target:  5'- -gGGCAGgGUcGCCagCACCGgCAGgUGCg -3'
miRNA:   3'- uaUCGUCgCA-CGGa-GUGGU-GUUgACG- -5'
12972 3' -54.1 NC_003387.1 + 15806 0.68 0.585408
Target:  5'- -cAGCGGgGUGCCgcugUCGCCGcCggUUGUg -3'
miRNA:   3'- uaUCGUCgCACGG----AGUGGU-GuuGACG- -5'
12972 3' -54.1 NC_003387.1 + 16241 0.68 0.561847
Target:  5'- cGUAGUAGCGguucaucUGCaUUGCCAuCGGCUGCg -3'
miRNA:   3'- -UAUCGUCGC-------ACGgAGUGGU-GUUGACG- -5'
12972 3' -54.1 NC_003387.1 + 26267 0.69 0.540756
Target:  5'- -cAGCaugGGCGUGCUcgACCGCAACgucGCa -3'
miRNA:   3'- uaUCG---UCGCACGGagUGGUGUUGa--CG- -5'
12972 3' -54.1 NC_003387.1 + 41196 0.69 0.529761
Target:  5'- -cGGCGGCGUGC---ACUACcGCUGCc -3'
miRNA:   3'- uaUCGUCGCACGgagUGGUGuUGACG- -5'
12972 3' -54.1 NC_003387.1 + 38010 0.69 0.51885
Target:  5'- --cGCAGCaaGCCgugCACCGCAACggaucGCg -3'
miRNA:   3'- uauCGUCGcaCGGa--GUGGUGUUGa----CG- -5'
12972 3' -54.1 NC_003387.1 + 5834 0.69 0.508028
Target:  5'- -aGGCGGCGgcgGCCUCaaguccggugccACCgGCAACgGCa -3'
miRNA:   3'- uaUCGUCGCa--CGGAG------------UGG-UGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 27986 0.7 0.497303
Target:  5'- cUGGCAG-GUGCCUUACCGCccgauCgaggGCa -3'
miRNA:   3'- uAUCGUCgCACGGAGUGGUGuu---Ga---CG- -5'
12972 3' -54.1 NC_003387.1 + 34478 0.7 0.496237
Target:  5'- cAUGGCGGCGgaugcgGCCUacgaguaCGCCcGCcGCUGCg -3'
miRNA:   3'- -UAUCGUCGCa-----CGGA-------GUGG-UGuUGACG- -5'
12972 3' -54.1 NC_003387.1 + 25038 0.7 0.486681
Target:  5'- aGUGGguGCGUGaCCgUUAcCCGCGGCUGa -3'
miRNA:   3'- -UAUCguCGCAC-GG-AGU-GGUGUUGACg -5'
12972 3' -54.1 NC_003387.1 + 44045 0.7 0.486681
Target:  5'- -cAGCGGCGUGCCgaacggcgcaUACCACAGgCcGCc -3'
miRNA:   3'- uaUCGUCGCACGGa---------GUGGUGUU-GaCG- -5'
12972 3' -54.1 NC_003387.1 + 23916 0.7 0.459586
Target:  5'- uUGGUGGCGUGCgCUucccaCGCCGCGgugugccagucccauGCUGCa -3'
miRNA:   3'- uAUCGUCGCACG-GA-----GUGGUGU---------------UGACG- -5'
12972 3' -54.1 NC_003387.1 + 51312 0.71 0.425407
Target:  5'- -cGGCGGCGgcGCCUCG-CACAACUucgaGCg -3'
miRNA:   3'- uaUCGUCGCa-CGGAGUgGUGUUGA----CG- -5'
12972 3' -54.1 NC_003387.1 + 38424 0.71 0.424424
Target:  5'- -gAGCGGCuggcgcugGUGCC-CAagaaggcCCACGACUGCg -3'
miRNA:   3'- uaUCGUCG--------CACGGaGU-------GGUGUUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.