miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12972 3' -54.1 NC_003387.1 + 39889 1.09 0.000958
Target:  5'- cAUAGCAGCGUGCCUCACCACAACUGCc -3'
miRNA:   3'- -UAUCGUCGCACGGAGUGGUGUUGACG- -5'
12972 3' -54.1 NC_003387.1 + 41196 0.69 0.529761
Target:  5'- -cGGCGGCGUGC---ACUACcGCUGCc -3'
miRNA:   3'- uaUCGUCGCACGgagUGGUGuUGACG- -5'
12972 3' -54.1 NC_003387.1 + 44623 0.68 0.596698
Target:  5'- cGUGGCgcgAGCGUGuggcCCUgGCCGCGGCcucgGCg -3'
miRNA:   3'- -UAUCG---UCGCAC----GGAgUGGUGUUGa---CG- -5'
12972 3' -54.1 NC_003387.1 + 52492 0.66 0.731603
Target:  5'- --uGgGGCG-G-CUCACCGCAAgUGCa -3'
miRNA:   3'- uauCgUCGCaCgGAGUGGUGUUgACG- -5'
12972 3' -54.1 NC_003387.1 + 12459 0.73 0.326009
Target:  5'- cUGGCGGCG-GCCUgGCCGCGGgcCUGg -3'
miRNA:   3'- uAUCGUCGCaCGGAgUGGUGUU--GACg -5'
12972 3' -54.1 NC_003387.1 + 19753 0.73 0.342735
Target:  5'- -aGGuCGGCG-GCCUCGCCGgAaacauGCUGCa -3'
miRNA:   3'- uaUC-GUCGCaCGGAGUGGUgU-----UGACG- -5'
12972 3' -54.1 NC_003387.1 + 9241 0.72 0.387203
Target:  5'- --cGCGGgGUGUCUCACCACAuucacACcaggGCa -3'
miRNA:   3'- uauCGUCgCACGGAGUGGUGU-----UGa---CG- -5'
12972 3' -54.1 NC_003387.1 + 13305 0.72 0.387203
Target:  5'- -gGGCGGCG-GCCUCgACgGCAGCgaccuggGCa -3'
miRNA:   3'- uaUCGUCGCaCGGAG-UGgUGUUGa------CG- -5'
12972 3' -54.1 NC_003387.1 + 51312 0.71 0.425407
Target:  5'- -cGGCGGCGgcGCCUCG-CACAACUucgaGCg -3'
miRNA:   3'- uaUCGUCGCa-CGGAGUgGUGUUGA----CG- -5'
12972 3' -54.1 NC_003387.1 + 38010 0.69 0.51885
Target:  5'- --cGCAGCaaGCCgugCACCGCAACggaucGCg -3'
miRNA:   3'- uauCGUCGcaCGGa--GUGGUGUUGa----CG- -5'
12972 3' -54.1 NC_003387.1 + 34478 0.7 0.496237
Target:  5'- cAUGGCGGCGgaugcgGCCUacgaguaCGCCcGCcGCUGCg -3'
miRNA:   3'- -UAUCGUCGCa-----CGGA-------GUGG-UGuUGACG- -5'
12972 3' -54.1 NC_003387.1 + 38424 0.71 0.424424
Target:  5'- -gAGCGGCuggcgcugGUGCC-CAagaaggcCCACGACUGCg -3'
miRNA:   3'- uaUCGUCG--------CACGGaGU-------GGUGUUGACG- -5'
12972 3' -54.1 NC_003387.1 + 23048 0.74 0.279509
Target:  5'- -cGGCGGCGUGCCgaucacgCACUACGcCgUGCg -3'
miRNA:   3'- uaUCGUCGCACGGa------GUGGUGUuG-ACG- -5'
12972 3' -54.1 NC_003387.1 + 27986 0.7 0.497303
Target:  5'- cUGGCAG-GUGCCUUACCGCccgauCgaggGCa -3'
miRNA:   3'- uAUCGUCgCACGGAGUGGUGuu---Ga---CG- -5'
12972 3' -54.1 NC_003387.1 + 39320 0.73 0.30207
Target:  5'- -cGGCgagGGCGUGCUgugaUCACCGCGGCgGCc -3'
miRNA:   3'- uaUCG---UCGCACGG----AGUGGUGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 10650 0.71 0.396541
Target:  5'- -gGGUacGGCGUucgGCCUCGaCGCGGCUGCg -3'
miRNA:   3'- uaUCG--UCGCA---CGGAGUgGUGUUGACG- -5'
12972 3' -54.1 NC_003387.1 + 5834 0.69 0.508028
Target:  5'- -aGGCGGCGgcgGCCUCaaguccggugccACCgGCAACgGCa -3'
miRNA:   3'- uaUCGUCGCa--CGGAG------------UGG-UGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 26267 0.69 0.540756
Target:  5'- -cAGCaugGGCGUGCUcgACCGCAACgucGCa -3'
miRNA:   3'- uaUCG---UCGCACGGagUGGUGUUGa--CG- -5'
12972 3' -54.1 NC_003387.1 + 632 0.73 0.317876
Target:  5'- -gGGCAGCGUcGCC--GCCGCGGCaGCg -3'
miRNA:   3'- uaUCGUCGCA-CGGagUGGUGUUGaCG- -5'
12972 3' -54.1 NC_003387.1 + 41135 0.72 0.360072
Target:  5'- aGUGGCAGCGcGCCg-ACgGCcGCUGCg -3'
miRNA:   3'- -UAUCGUCGCaCGGagUGgUGuUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.